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RAFL06-67-P20

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17217)

full reading [+] show sequence

Nucleotide sequence: RAFL06-67-P20 - full reading 
GGATAAAATC GGGCTGACCC GAACCCGGTT TAGTGCGAGA TTCCACTGTC 
CGTCGTTAAC AAAGGAGCTA AATCTCAGAA CGATTTCTCG ATTTGCTTTT 
GCGACATTAT AATTTTCCTT TCAATTGACT CAGTGAGTCG CCGATCGAGT 
TAGAAATGGG AATGGGAAGT AACGGAGAAT TGAAGTATGA GATCTCCCAG 
AACGCGTACA TCAAACTCGT TCTTCACTCG CTGCGACACA AGACGGCGGC 
GGTCAACGGA GTCCTCGTCG GTAGAATCAG CCCTAAGGAC GACGGAGTTG 
TAGAGATCTC AGATTCTGTG CCGCTCTTTC ACTCTAACCT CGCTCTCCTT 
CCTCCTCTCG AGATCTCCCT CATCATGATA GAGGAGCATT ATGTGGCTCA 
AGGTTTAAGT ATTGTTGGAT ACTTTCATGC AAACGAGAGG TTTGATGACG 
TTGAGCTCTG TGGTGTGGCT AAAAACATTG GTGATCACAT TTCTCGCTAT 
TTCCCTCAGG CACCAATTCT CTTGTTGAAC AACAAAAAGC TTGAAGCCTT 
ATCAAAGGGT AAAGAGCGAA GCCCTGTGAT GCAGCTCTGT GTGAAGGATG 
CTTCTAAGAA CTGGAGAGTA GTTGGAGCAG ATGGAGGAAG CAAGCTACTC 
TTAAAAGAGC CATCGGCCAA TGTAGTTTTG TCAGATTACA TTTCATCTGA 
GAAATGGAAG GACGTCACAG ATGTTGATGA TCATCTTGAT GATGTAACAA 
AGGACTGGCT AAACCCTGGA CTTTTCAACT GAAGATGGGT ATGCGACATA 
GCTAAACTAG ACTTTTGCTT TCATCATCTT CTGTCGAAAA ACAAAAAAGT 
TCTCGGAGAC CATTGTTTAA AATTTCCCTT GAATCTTGTT AAAGTATTAT 
CCAGCTATGC AACAGAGCTC AAATTACTTT TAATTGGTAC ACATCTTAAA 
CCTTAGTTAT ATCATTTGAA TGATATCTTT TGGAGCTTGT TACAAAAAAA 
A

Gene models with high sequence identity

  1. AT5G55940.1 [+] show detail - Uncharacterised protein family (UPF0172)
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Uncharacterised protein family UPF0172 1.9e-63
HMMPanther gb def: Hypothetical UPF0172 protein At5g5594 3.2e-179
HMMPanther Uncharacterised protein family UPF0172 3.2e-179

See the detailed result >

AT5G55940.1

Model type
Protein coding
Short Description
Uncharacterised protein family (UPF0172)
Computational Description
embryo defective 2731 (emb2731); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0172 (InterPro:IPR005366); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0172) (TAIR:AT5G51620.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-67-P20 introduced

  • F00313 - Specific phenotypes were NOT observed.
  • F00423 - seed::decreased size
  • F00538 - Specific phenotypes were NOT observed.
  • F22528 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found