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RAFL06-67-P21

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03286)

full reading [+] show sequence

Nucleotide sequence: RAFL06-67-P21 - full reading 
ACAAGCCCTA CAACAACCAC AAAGCAAAAC ACTTACTTAG AAAGTCCAGA 
AACATCCATT AACACATATG GCTAAAGACG TGGAAGGACC TGATGGATTT 
CAGACGAGAG ATTACGAAGA TCCTCCGCCA ACACCGTTTT TCGACGCAGA 
GGAGCTTACC AAGTGGTCTT TATACAGAGC AGTCATCGCC GAGTTCGTAG 
CCACTCTCCT CTTCTTGTAC GTCACCGTTT TAACTGTCAT TGGTTACAAG 
ATTCAGTCCG ACACAAAAGC CGGTGGAGTT GACTGCGGCG GCGTCGGAAT 
CCTTGGCATC GCGTGGGCTT TTGGTGGCAT GATCTTCATC CTTGTCTACT 
GCACCGCCGG TATCTCAGGT GGTCACATAA ACCCTGCGGT GACGTTTGGT 
TTGTTCTTAG CCCGGAAGGT ATCGCTGATT AGGGCGGTGC TTTACATGGT 
GGCTCAGTGT TTGGGTGCTA TTTGTGGAGT TGGGTTTGTG AAGGCATTTC 
AAAGCTCTCA CTATGTTAAT TACGGTGGAG GAGCCAACTT TCTAGCTGAC 
GGCTACAATA CAGGCACCGG ACTCGCGGCA GAGATCATCG GAACATTCGT 
GCTTGTCTAC ACAGTCTTCT CCGCTACTGA TCCCAAACGC AACGCTAGAG 
ACTCCCACGT TCCGGTTTTG GCGCCACTTC CGATTGGGTT TGCGGTGTTT 
ATGGTACATT TGGCCACTAT TCCGATCACC GGAACCGGTA TCAACCCGGC 
TAGGAGTTTC GGAGCCGCCG TAATCTTTAA CAAGAGCAAG CCATGGGATG 
ACCACTGGAT ATTCTGGGTG GGACCATTCA TTGGAGCTAC GATAGCTGCA 
TTTTATCACC AATTCGTTCT AAGGGCCTCA GGCTCCAAGT CCCTCGGTTC 
ATTCAGAAGT GCAGCCAACG TTTAAACTTA GCCACGAAAG AAAAAAAGTG 
TGCCTACAAT TATGTAGAAA CATATCCTCT TTTCCACTCG TATCTTAGCT 
TCTTCCTATT TTCTATTTCT AACTGTGTGA TTCCATATTA AATCGAGTGA 
AATGTTTTTC AATTCATCTT TGCAACGTAT GTAAGTTTGG TGTATTGAGA 
AAAAAAAATC GAGAAAGACA ACTTTTTCTT CGATTAAAAA AAAAAAAAAA 
A

Gene models with high sequence identity

  1. AT2G37180.1 [+] show detail - Aquaporin-like superfamily protein
    E-value: 0; Score: 99.91

 

InterPro Scan Digest

Program Description E-value
Gene3D Major intrinsic protein 4.6e-65
HMMTigr Aquaporin 3.3e-92
PatternScan Major intrinsic protein, conserved site 0
HMMPanther AQUAPORIN-RELATED 6.9e-191
HMMPanther Major intrinsic protein 6.9e-191
FPrintScan Major intrinsic protein 2.1e-70
FPrintScan Major intrinsic protein 2.1e-70
FPrintScan Major intrinsic protein 2.1e-70
FPrintScan Major intrinsic protein 2.1e-70
FPrintScan Major intrinsic protein 2.1e-70
FPrintScan Major intrinsic protein 2.1e-70
superfamily Major intrinsic protein 3.5e-62
HMMPfam Major intrinsic protein 1.7e-86

See the detailed result >

AT2G37180.1

Model type
Protein coding
Short Description
Aquaporin-like superfamily protein
Curator Summary
a member of the plasma membrane intrinsic protein PIP2. functions as aquaporin and is involved in dessication.
Computational Description
RESPONSIVE TO DESICCATION 28 (RD28); FUNCTIONS IN: water channel activity; INVOLVED IN: response to desiccation, response to water deprivation, transport, response to osmotic stress; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: shoot, root, flower, cultured cell, leaf; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 2 (TAIR:AT2G37170.1); Has 10809 Blast hits to 10795 proteins in 2215 species: Archae - 81; Bacteria - 5139; Metazoa - 1474; Fungi - 455; Plants - 2518; Viruses - 2; Other Eukaryotes - 1140 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-67-P21 introduced

  • F07640 - Specific phenotypes were NOT observed.
  • F15936 - Specific phenotypes were NOT observed.
  • F20703 - Specific phenotypes were NOT observed.
  • F24919 - Specific phenotypes were NOT observed.
  • F27946 - rosette leaf::decreased size / cauline leaf::decreased size / stem::increased thickness / stem::decreased thickness / stem::present in fewer numbers in organism / stem::abnormal

Mutant lines with disrupted or induced

6 mutant lines found