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  3. RAFL06-68-A19

RAFL06-68-A19

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03289)

full reading [+] show sequence

Nucleotide sequence: RAFL06-68-A19 - full reading 
AAAATCCCCA CACAGTTCGA TGGGAAGACT TTGGGAATCA CTGCCCGTGA 
TTCTTCTACT CTTAGTTCTT CTTCTTCATC AATCAGTCTC TCAGGGGTTT 
GAAGAATCTG AATCTACTAG ATTGGTTAAC GAAGAAGTAG AAGTTAGTAA 
TGCTCCAGAA ATACATTGTT CCCGAGAAAG AAGTCGAGCA GCTTGGCAGA 
TTATACAAGA TTATTTGACG CCATTTGTGG AACGGGAAAG ATATGAAATT 
CCAAAAAATT GTAGGCTGCA TCCTGATAAT GATTTATACA GAGATCAGGA 
ACATCATAAG GTTCATGTTG ATGTCTTCGA ATGGAAATGT GGTTACTGCA 
AGAAAAGTTT CAATGATGAG AAATTTCTTG ACAAGCATTT CAGTACTAGA 
CATTATAATC TTTTAAATAC GACTGATACA AAGTGTTTAG CCGACCTGTG 
TGGTGCATTG CATTGTGACT TTGTATTGAG CTCTAAGAAA CCCAAGAGCA 
AGTGCAACCC TCCTGCTGTT GCCAAAAACC GTCATCTCTG CGAGAGCGTT 
GCCAATAGTT GTTTCCCAGT GAGTCAAGGT CCCTCAGCTA GTCGTCTTCA 
TGAACACTTT TTGCGCCAAT TCTGTGATGC TCATACCTGC ACTGGAAATG 
ATAAACCCTT TCCTAGAGGA GGCAAGAAGA AATCGGGTGT CTTCTACCTC 
GCCATTTCAA TATTGACCTT GATGCTACTC CCACTCTTTT ATCTTCTAGT 
CTTCTTACAT CAAAGAGAAA AGAGAAGCGG AACACAAGAT TTGCGTCGTA 
TTATAAAATC TGGAAAAAAA ACAAAACCGT CATAAGATGG TAAGCTTCAA 
ACTGCTCTTG AGATACAGGA TGTTCAAATC CGATATTGGT TTGGTGAATC 
ACAAATCTTC CTCATTACTT CTCCATCTCA GACCTTTCCT CATTTGGTGT 
TTCTCAAACC AGAGACTTAT GGATTCCAAA CGAGAGTATT TCTATGTGGT 
TATGAAGCTA GTTGCTATGG ATATCAGATG GATTACATAG ACAAATGATT 
TTTCTGTAAG CTTGTAAAAA CAGATGATTC CTTCCACAAA ATAGGAATAG 
TGATTAGATT TTTCTCTGTA ATTTTATCGA ATCTTCATAC ATATCAATGA 
TAACATCAAG GTTGAAACAC AGAAAAAAAA AAAAAAAA

Gene models with high sequence identity

  1. AT5G63280.1 [+] show detail - C2H2-like zinc finger protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
ProfileScan Zinc finger, C2H2-type 8.621
HMMPanther ZINC FINGER PROTEIN-RELATED 7.5e-121
PatternScan Zinc finger, C2H2-type 0

See the detailed result >

AT5G63280.1

Model type
Protein coding
Short Description
C2H2-like zinc finger protein
Computational Description
C2H2-like zinc finger protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT5G40710.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-68-A19 introduced

  • F05647 - Specific phenotypes were NOT observed.
  • F14205 - Specific phenotypes were NOT observed.
  • F27020 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

16 mutant lines found