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RAFL06-68-C07

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07613)

full reading [+] show sequence

Nucleotide sequence: RAFL06-68-C07 - full reading 
GGAGAGAGAG AAAGATGCAG AGGGACGTGT CGAGCTGCAA CACTTACAAC 
TATGGAGACG CTCTCTATTG GGACGCTCGT TACGTGCAAG ACGCGCTTTC 
TTTCGACTGG TACCAATGTT ACTCTTCTCT CCGCCCTTTT GTCCGCAGCT 
TCGTCTCTAC TTCTTCACGA GTCCTCATGG TTGGCTGTGG CAACTCCCTG 
ATGTCAGAGG ATATGGTGAA GGATGGGTAT GAGGACATCA TGAATGTTGA 
TATCTCTTCA GTGGCTATTG AGATGATGCA AACCAAATAT GCATCTGTTC 
CTCAGCTCAA ATATATGCAA ATGGATGTTA GAGATATGAG TTACTTTGAA 
GACGATTCCT TTGACACTAT TATTGATAAA GGAACCCTTG ATTCATTGAT 
GTGTGGCAGT GATGCTCTTC TAAGTGCTTC GAGAATGTTG GGTGAAGTTA 
GCAGGCTGAT TAAACCTGGA GGGACCTACT TTTTGATAAC CTACGGTGAT 
CCGAAAGTGA GAATGCCTCA TTTGACTCGT TCTGCGTACA ACTGGAAGAT 
CTCCTTATAC ATTATACCAA GACCAGGATT TAAAAGGCCA GAAAGTTGCA 
GCTCGTCAGC AAAGTCTTGT ATGGAAGCTA TACCTATAAC AAGTGAGGGA 
ATGCTGCCAC ATGATTATGT TCTGGAGGAT CCTGATTCCC ATTTTATTTA 
CATATGCAAG AAGAAGGATG AAGATGAAGA AGCTCAACTA CCCTCATACC 
CATTAATGGA GGATGTTTTG TAGTGATGGC ACGCAGAGGC TCAAACAATG 
CAAAATTGTG CATGTGTGTT TGTCTTTTTG ATCCCCATTT AGACCAGTCG 
ATCTATTGTT GTATTTTATG TGTCTTGTGA TCTTATCCCA ATTGATAGGT 
CCGAGTCTCA GAATTGCTCT ATAAACTCAT AATATACGAA TAAACATCAA 
CCTTTATTAT CTCGAAAAAA AAAAAAAAAA

Gene models with high sequence identity

  1. AT3G60910.1 [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther UNCHARACTERIZED 4e-100
superfamily S-adenosyl-L-methionine-dependent methyltrans 1.1e-21
Gene3D no description 0.0000000016
HMMPfam Methyltransferase type 11 0.000000000012

See the detailed result >

AT3G60910.1

Model type
Protein coding
Short Description
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Computational Description
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: methyltransferase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT3G17365.1); Has 1732 Blast hits to 1731 proteins in 520 species: Archae - 43; Bacteria - 761; Metazoa - 337; Fungi - 50; Plants - 206; Viruses - 0; Other Eukaryotes - 335 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-68-C07 introduced

  • F00511 - Specific phenotypes were NOT observed.
  • F01702 - Specific phenotypes were NOT observed.
  • F02423 - Specific phenotypes were NOT observed.
  • F08749 - Specific phenotypes were NOT observed.
  • F09221 - seed::increased size / seed::increased length
  • F17106 - rosette leaf::abnormal / rosette leaf::present in greater numbers in organism / cauline leaf::decreased size / stem::abnormal / rosette leaf::abnormal / rosette leaf::abnormal / cauline leaf::abnormal
  • F22903 - stem::decreased thickness / stem::present in greater numbers in organism / stem::abnormal

Mutant lines with disrupted or induced

9 mutant lines found