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  3. RAFL06-68-J11

RAFL06-68-J11

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03301)

full reading [+] show sequence

Nucleotide sequence: RAFL06-68-J11 - full reading 
AACAGAGGCA ACTACAACCG CCTTTCTTCT TCTTCCTCAT AGCAATCGAA 
AACGCTTTCG CACTTTCTCT TGCTTTGACA ATTTCTGTTT TTATTCAATG 
GGTTCTAGTC AAGATCTCTT CTTCCTCATC ATCGTTCTCT TCTCCTCGAT 
TCTCTTTCCT CAGCTTTCCT CGCTACCGGA TCCGTCGTTT TACGATTATC 
TCCGGGAAAG CAATCTTCCC GCCGGAATAG TTCCCAAAGG AGTTACCAAT 
TTCTCGATCG ACATCAAAAC GGGGCGTTTC ACCGTCGCTC TCCCTGTTCC 
TTGCGATGCT AAATTCGAGA ATCAGTTCCA CTTCGACTAC AATATCTCCG 
GCGTTCTCTC CGATGGACGG ATCGGGAATT TATCTGGTGT GACGCAGAAG 
GAGCTGTTTC TTTGGTTTGC TGTGAAAGGA ATACATGTTG ATCCGCAGAG 
CTCTGGGTTA ATTCACTTTG ATGTCGGTGT CGCTGATAAG CAGCTTTCTC 
TTTCGCTCTT TGAGTCGCCT CGAGATTGCA CCGCCGCGGA ATCTCAACCT 
CGTGCGGTTG ATCTCTCTAG ACCCCGTGAT TTGGAGAAGC AATCTGAAGA 
AATGCAATCG ACAATGCAGA AGCAACCTGA AGAGATCCAA TCGATATTTG 
GACCACGAAG AAGTCGCTGG ACATTAGGTT TTTGATCTGA GGCTTAGAAG 
GAAGTGCAAA TTCTACTGAT GATGTCTTTT GGTATGGTGT GTGTTGTAAA 
AAGTTTGGTT TGTAGTAGTT TTTTTTGTTT TACACCATAT CATAGTATCA 
TCAACAGCAT AAGCTTAGGA GGCATGAATA CTTTTTTTTC TTTTTGCTTT 
GGTACACGAT TAGGGGTTAA GACATATATA TATACATATA TGCTTGTGGA 
TTTTTCACCA GAAACTGTTG TGTTATCACA CTCTTTTCTT GGTTTTTTTA 
CTTTGTAAAA GAAAGGATGT TGAGGATACA TGAATCTTTT TGTTTTGTGG 
TTGTTAAAAA AAAAAAAAAA A

Gene models with high sequence identity

  1. AT5G16380.1 [+] show detail - Protein of unknown function, DUF538
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D Protein of unknown function DUF538 4e-33
PatternScan Zinc finger, C2H2-type 0
HMMPfam Protein of unknown function DUF538 5.7e-28

See the detailed result >

AT5G16380.1

Model type
Protein coding
Short Description
Protein of unknown function, DUF538
Computational Description
Protein of unknown function, DUF538; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF538 (TAIR:AT3G07470.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-68-J11 introduced

  • F01308 - Specific phenotypes were NOT observed.
  • F12836 - Specific phenotypes were NOT observed.
  • F15702 - Specific phenotypes were NOT observed.
  • F16020 - stem::decreased thickness / stem::abnormal
  • F16239 - Specific phenotypes were NOT observed.
  • F20820 - Specific phenotypes were NOT observed.
  • F21048 - Specific phenotypes were NOT observed.
  • F23020 - Specific phenotypes were NOT observed.
  • F23337 - Specific phenotypes were NOT observed.
  • F23338 - Specific phenotypes were NOT observed.
  • F25331 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

11 mutant lines found