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RAFL06-68-J18

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07619)

full reading [+] show sequence

Nucleotide sequence: RAFL06-68-J18 - full reading 
AGGCTCTTCT TTACTCTGGT TTCGAGTTTG GGTTGTGCAA ACATGGCGAC 
GAGCTCTCAT CTTCTTCCTC AGGCATTGCA TATGATACCG AGAACCCCTT 
CTTTCTCGTC GAAGAATTTA GGGGTTTCTT CAATTCTACC ACGAGCATCA 
TCAGTGAACT CAAGACTATC AGTTTCTAGG GTTTTTCTCA ATCATTCGAG 
CTCCAATTTT GGTTTCGCCA TCGATTCCAA GAAGAGAAAA GAGTTTATCG 
CTAAAGCTGA AGAGAGTACT GAAGGTGAAA CTGAGGCTGT TGTGGAGAAT 
GCTGTTGAAA CTGAAGCGGA AGGAGAAGGA GAAGCCACTG TTGCGGCGGA 
GGAAGCTAAA CCTCCGTGGA AGACGAGAGT CAAGCTCGGA GATATCATGG 
GGCTACTGAA CAAGAAAGCT ATTGAGGTTG CAGAGACTGT AAGACCGGTT 
CCTGGACTTA GGACTGGGGA TATTGTAGAA ATCAAACTGG AAGTTCCTGA 
GAACAAACGT AGGCTATCTA TCTACAAAGG TATTGTGATG TCTAGACAAA 
ATGCAGGCAT CCACACTACT ATCCGTATCC GGAGGATTAT TGCAGGCATT 
GGTGTTGAAA TCGTCTTTCC CATATACTCT CCCAACATAA AGGAGATAAA 
AGTGGTAAGT CACAGGAAAG TGAGAAGAGC AAGACTTTAC TATCTGAGGG 
ACAAACTTCC TCGTCTCTCA ACTTTTAAAT GATCACCAAA CCCAACACCA 
GTCTTGTCTT GTGTTGTCTT CAATCTCCAA AGGTAGCTAG CTACTCTCTT 
TTCTCTTGTA ATAATTGTTT GTTTGTTTCG TCTTTTGGAT TTCATTTCTT 
TTCATGTAAT TTACAGTAAC AGTAATTTAA GAAAAGTAAA TCAATGTTGA 
TTGTTTTGAT CGAAAAAAAA AAAAAAAA

Gene models with high sequence identity

  1. AT5G47190.1 [+] show detail - Ribosomal protein L19 family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Ribosomal protein L19 1.8e-31
HMMPanther 50S RIBOSOMAL PROTEIN L19 4.3e-144
HMMPanther Ribosomal protein L19 4.3e-144
FPrintScan Ribosomal protein L19 0.0000000019
FPrintScan Ribosomal protein L19 0.0000000019
HMMTigr Ribosomal protein L19 1.2e-23

See the detailed result >

AT5G47190.1

Model type
Protein coding
Short Description
Ribosomal protein L19 family protein
Computational Description
Ribosomal protein L19 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, chloroplast stroma, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L19 (InterPro:IPR001857); BEST Arabidopsis thaliana protein match is: Ribosomal protein L19 family protein (TAIR:AT4G17560.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-68-J18 introduced

  • F06312 - Specific phenotypes were NOT observed.
  • F12251 - rosette leaf::decreased size / rosette leaf::increased width / sporophyte vegetative stage::decreased speed / stem::present in fewer numbers in organism / stem::abnormal
  • F19305 - rosette leaf::abnormal / rosette leaf::abnormal / whole plant::decreased height / rosette leaf::dark green / rosette leaf::epinastic / rosette leaf::present in greater numbers in organism / rosette leaf::abnormal / cauline leaf::decreased size
  • F19539 - rosette leaf::decreased size / rosette leaf::abnormal / sporophyte vegetative stage::decreased speed
  • F19941 - Specific phenotypes were NOT observed.
  • F25819 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found