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  3. RAFL06-68-K16

RAFL06-68-K16

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03304)

full reading [+] show sequence

Nucleotide sequence: RAFL06-68-K16 - full reading 
AACCCAACAA ATTCATTCTA AATACATTTC TTTTCACTCA AGAAATTAAA 
ATTTCGAAAA GTTTGTTAAA ATGAATGCAC ACATGCTCAA TCTCCTTGTC 
ATAGTCATTT TTGTAGTTTC TTTCGATGTC CAAGCACTCA GTCCTCACTA 
CTACGACCAT ACTTGTCCAC AAGCCGACCA CATTGTAACC AATGCAGTCA 
AGAAAGCCAT GTCAAACGAC CAAACTGTCC CTGCTGCGCT TTTGAGGATG 
CATTTCCACG ACTGTTTCGT CAGAGGATGT GATGGCTCAG TTCTCTTAGA 
CTCTAAGGGG AAGAACAAAG CAGAGAAAGA TGGACCTCCT AACATCTCAC 
TCCATGCATT TTATGTGATT GACAATGCAA AGAAGGCATT AGAAGAACAA 
TGTCCCGGTA TCGTCTCTTG CGCCGACATT CTTTCACTTG CGGCAAGAGA 
TGCTGTCGCT CTCTCAGGAG GGCCTACATG GGCAGTGCCA AAAGGGAGAA 
AAGATGGAAG AATATCAAAG GCAATAGAAA CAAGACAACT ACCAGCTCCT 
ACTTTCAACA TTTCTCAATT GCGTCAAAAT TTTGGCCAAA GAGGCCTCTC 
TATGCATGAT CTTGTTGCTC TCTCTGGAGG TCATACACTA GGATTCGCCC 
ACTGTTCATC GTTCCAGAAT AGGCTCCATA AATTCAACAC ACAAAAGGAG 
GTTGACCCAA CACTAAACCC CTCATTCGCA GCCAGGTTGG AGGGAGTGTG 
CCCGGCCCAT AACACGGTGA AGAATGCTGG ATCGAACATG GATGGAACCG 
TGACGTCATT CGACAATATC TACTACAAGA TGCTTATCCA AGGCAAGTCA 
CTATTCTCAT CCGACGAATC GCTTCTTGCA GTACCCTCTA CTAAGAAACT 
CGTGGCCAAA TATGCAAATT CCAACGAAGA GTTCGAGAGG GCTTTTGTGA 
AATCGATGAT CAAGATGAGT AGTATCAGTG GGAATGGCAA TGAGGTCAGA 
CTTAACTGCA GAAGGGTTCG CTAGAATCTC AATCTACGCT TCCAACATCA 
CGTTACTACT ACATTTTTAT GTCTTTCGTT TTCTTTCGTC ACATTGATTA 
CTTGTGAATG GGCCTTTCTA AAGATTAAGG CAGAGGTTCT TGTATCAGAA 
TTATCTATCA ATCTCTCGTG TGTGCTTGTA TAGGCATTTA TTTACAAGTA 
ATAAGATCTT TTCTCTTTCT AAAAAAAAAA AAAAA

Gene models with high sequence identity

  1. AT5G42180.1 [+] show detail - Peroxidase superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
ProfileScan Haem peroxidase, plant/fungal/bacterial 74.16
FPrintScan Plant peroxidase 1.4e-47
FPrintScan Plant peroxidase 1.4e-47
FPrintScan Plant peroxidase 1.4e-47
FPrintScan Plant peroxidase 1.4e-47
FPrintScan Plant peroxidase 1.4e-47
FPrintScan Plant peroxidase 1.4e-47
FPrintScan Plant peroxidase 1.4e-47
FPrintScan Plant peroxidase 1.4e-47
FPrintScan Plant peroxidase 1.4e-47
FPrintScan Haem peroxidase, plant/fungal/bacterial 5.3e-31
FPrintScan Haem peroxidase, plant/fungal/bacterial 5.3e-31
FPrintScan Haem peroxidase, plant/fungal/bacterial 5.3e-31
FPrintScan Haem peroxidase, plant/fungal/bacterial 5.3e-31
FPrintScan Haem peroxidase, plant/fungal/bacterial 5.3e-31
HMMPfam Haem peroxidase, plant/fungal/bacterial 5.1e-77
PatternScan Peroxidases heam-ligand binding site 0
Gene3D no description 3.8e-56
superfamily Haem peroxidase 2.4e-100

See the detailed result >

AT5G42180.1

Model type
Protein coding
Short Description
Peroxidase superfamily protein
Computational Description
Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: oxidation reduction, response to oxidative stress; LOCATED IN: plant-type cell wall; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT5G51890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-68-K16 introduced

  • F19425 - rosette leaf::decreased size / stem::abnormal / flower::abnormal / fruit::abnormal
  • F21028 - seed::increased size

Mutant lines with disrupted or induced

3 mutant lines found