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RAFL06-68-L02

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03307)

full reading [+] show sequence

Nucleotide sequence: RAFL06-68-L02 - full reading 
GAGAGAGAGA TAAATAAAGA GAAAACTAAA GAAGCTAGAA GATGGAGAAA 
AGTAATGATC ATGACAAGGC TAGCCACGGC GCCTCCGGTG GTGGTGCCAC 
GGAGAAGTGG GAGGAGACTA GCCTCGGAAT CCGAACTGCC GAGACAATGC 
TCCGGTTAGC TCCGGTGGGC CTTTGTGTTG CAGCACTTGT TGTCATGCTT 
AAGGACTCTG AGACTAATGA GTTCGGTTCA ATTTCTTACT CCAATCTCAC 
AGCCTTTAGG TACTTGGTGC ACGCAAATGG AATATGTGCA GGCTACTCTC 
TTCTATCAGC AGCCATTGCA GCGATGCCTC GTTCTTCTTC GACAATGCCT 
CGTGTTTGGA CCTTCTTTTG TCTCGACCAG CTTCTGACCT ACCTGGTTCT 
TGCTGCTGGA GCTGTATCAG CTGAGGTTCT ATACTTGGCT TACAATGGAG 
ACTCAGCCAT TACTTGGAGC GATGCATGTA GCTCCTATGG CGGTTTCTGT 
CATAGAGCCA CTGCTTCTGT TATAATCACA TTCTTTGTGG TTTGTTTCTA 
CATCGTTCTC TCTCTAATCT CCTCTTATAA GCTCTTTACT CGCTTTGATC 
CTCCTTCCAT TGTTGACTCC GCCAAGAATC TCGAAGTCGC TGTCTTCGGA 
AGTTAGATCC TCCATTTGCT CTTCAAGTAC ATCTAGTTTG TCATGTTTCA 
AATGTTGTGT GTTTTTAACT TTGGTCAAGA GAAAGAATGC TTATGTGTTT 
GCTCTTCTTC CAAAAAAAAA AAAAAAA

Gene models with high sequence identity

  1. AT1G17200.1 [+] show detail - Uncharacterised protein family (UPF0497)
    E-value: 0; Score: 99.87

 

InterPro Scan Digest

Program Description E-value
HMMPanther NITRATE, FROMATE, IRON DEHYDROGENASE 8e-25
HMMTigr Uncharacterised protein family UPF0497, trans-membrane plant subgroup 1.6e-23
HMMPfam Uncharacterised protein family UPF0497, trans-membrane plant 7.8e-41

See the detailed result >

AT1G17200.1

Model type
Protein coding
Short Description
Uncharacterised protein family (UPF0497)
Computational Description
Uncharacterised protein family (UPF0497); CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT3G14380.1); Has 681 Blast hits to 681 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 681; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-68-L02 introduced

  • F03510 - Specific phenotypes were NOT observed.
  • F03735 - Specific phenotypes were NOT observed.
  • F07737 - Specific phenotypes were NOT observed.
  • F08708 - seed::increased size / seed::increased length
  • F13122 - seed::increased size / seed::increased length
  • F13946 - rosette leaf::dark green / rosette leaf::decreased size / rosette leaf::increased width / cauline leaf::decreased size / stem::decreased thickness / sporophyte vegetative stage::decreased speed
  • F17410 - Specific phenotypes were NOT observed.
  • F19947 - Specific phenotypes were NOT observed.
  • F22524 - Specific phenotypes were NOT observed.
  • F23301 - Specific phenotypes were NOT observed.
  • F25035 - Specific phenotypes were NOT observed.
  • F28132 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

12 mutant lines found