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RAFL06-68-M20

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07624)

full reading [+] show sequence

Nucleotide sequence: RAFL06-68-M20 - full reading 
CGGATAAGAT CTTCAACCCT GACATATCTG CGAACTTTTA TGTATAGGCA 
TACTTTCATC CTCACTCATG AAGATAAACA AAAAATCTGG AAAACAGTGG 
AAAAGCTCCT TGTTGACAGC CAAGTAGAGG TACGAGAGCA TGCAGCAGCA 
GTTCTAGCAG GCCTAATGAA AGGAGGAGAT GAAGATTTTG CTGCAGATTT 
TCGTGATAGA TCCTATGCAG AGGCAAACTC AATCCAAAAG AGAAGAAATC 
GGAGGAAATC AAGTTCAACT CAGTCCATTG CGGGGGTGCA TGGAGCCGTT 
CTTGGTTTGG TAGCTTCAGT TTTGTCTGTT CCTTATGACA TGCCCAGCTG 
GCTGCCGGAG CATGTGACCT TACTGGCTCG GTTCGCGGGT GAACCTACAC 
CTATAAAATC GACTGTGACT AAAGCAGTGG CTGAGTTCCG GCGAACCCAT 
GCGGATACAT GGAACATCCA GAAAGACTCA TTCACCGAAG ATCAGCTTGA 
GATCTTGGCC GATACATCTT CCTCTTCCTC GTACTTTGCT TGATTAATGT 
CGAGGAACTG AGTCTCGTCA AAAGACGATA ATACTAAAGT AACTCCACCT 
TTTATTGATT TTTAATTTTG TGCCAAAATA GATGTAATAA TAATAACATG 
AAAGTTATAA AACCATGGTT TCGGTTTATA TATCACAGTG AAAGTTAGAG 
AAAAAAAAAA AAAAAA

Gene models with high sequence identity

  1. AT3G13330.1 [+] show detail - proteasome activating protein 200
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

See the detailed result >

AT3G13330.1

Model type
Protein coding
Short Description
proteasome activating protein 200
Curator Summary
Encodes a protein that interacts with the 26S proteasome. Mutants are phenotypically indistinguishable from wild type plants under a variety of growth conditions. Protein levels increase upon exposure of seedlings to MG132, a specific, potent, reversible, and cell-permeable proteasome inhibitor.
Computational Description
proteasome activating protein 200 (PA200); FUNCTIONS IN: binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3437 (InterPro:IPR021843), Armadillo-type fold (InterPro:IPR016024); Has 512 Blast hits to 355 proteins in 156 species: Archae - 0; Bacteria - 0; Metazoa - 127; Fungi - 262; Plants - 57; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-68-M20 introduced

  • F00108 - Specific phenotypes were NOT observed.
  • F03426 - Specific phenotypes were NOT observed.
  • F04801 - Specific phenotypes were NOT observed.
  • F05235 - seed::increased size / seed::increased length
  • F05539 - Specific phenotypes were NOT observed.
  • F11531 - Specific phenotypes were NOT observed.
  • F13030 - seed::increased size / seed::increased length
  • F15246 - Specific phenotypes were NOT observed.
  • F16646 - Specific phenotypes were NOT observed.
  • F21531 - Specific phenotypes were NOT observed.
  • F22233 - Specific phenotypes were NOT observed.
  • F23227 - Specific phenotypes were NOT observed.
  • F23626 - Specific phenotypes were NOT observed.
  • F24446 - Specific phenotypes were NOT observed.
  • F25736 - Specific phenotypes were NOT observed.
  • F26248 - seed::increased size
  • F27021 - Specific phenotypes were NOT observed.
  • F28218 - Specific phenotypes were NOT observed.
  • F30343 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

19 mutant lines found