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RAFL06-69-D05

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03320)

full reading [+] show sequence

Nucleotide sequence: RAFL06-69-D05 - full reading 
CTTCTCTCCT TCTCTCCCTT TTCTCTCTCT CTCGAAGATA TCGCCTTTAA 
TTCCTTCTTC TTCTTCTGAT TTCTTCAAAG ATTCATTTCT TAGAGATCTC 
AGCTTCTGTA AGAGTAGGCT AGCTACCAAA AAAAAAGAAA TAGAAAAAAA 
CATTGATGCT TAATCAGCAG TTCTTGGTGT TTGAGACACA TGTCTCCAAT 
AATACTCAGT GAGATCTTTC TCTCTGGGTT TATGTTAAAT TCCACAATCA 
GGCGCAGGAC CCATCTTGTT CAATCTTTCT CTGTTGTCTT CCTTTACTGG 
CTTTACTATG TCTCATGATC TCTGAACTTA TCTCCAGTTT TATATCTATA 
CGCATAATTA CAACAAAACC CTAGTTTCTT TTCAAATTTC TCTTCTTCGT 
TTTTCGTCAT CTGGGTCCTG TCCTGTTCTG TTGTGTCTTG TTCTGTTCTG 
TTTTTAATTC CCCTAAAAAC CCATTTTAAA ATATTTTATC TCTCTTCTCT 
TAAAAAAAAC TCTTCCCTGT TTTTGTTTGT GTGTTACTAA ATGGAATCGT 
CGTCGTCGGG AACAACTTCG TCGACGATTC AAACGTCGTC AGGATCGGAG 
GAGAGTCTCA TGGAGCAGAG GAAACGTAAA CGGATGCTCT CAAACCGTGA 
ATCTGCAAGG AGATCAAGAA TGAAGAAACA AAAGCTCCTA GACGATCTAA 
CGGCTCAGGT TAATCATCTG AAAAAAGAGA ACACGGAGAT CGTGACAAGT 
GTCAGCATCA CAACGCAACA CTACCTAACC GTTGAAGCAG AGAACTCTGT 
TCTCAGAGCT CAGCTTGATG AACTTAACCA CAGGCTCCAA TCTCTCAACG 
ACATCATCGA GTTCCTCGAC AGTAGCAACA ACAACAACAA CAACAACATG 
GGCATGTGTT CGAACCCTCT GGTTGGTTTG GAGTGTGATG ATTTCTTCGT 
GAATCAGATG AACATGTCTT ATATTATGAA CCAGCCTCTC ATGGCGTCTT 
CTGATGCTTT AATGTATTAA ATGTGGACCT AAAAACCCCC TCGAAATCAC 
AAAGAAATGG GGCCGTTTTT ATTTGTCCGA TTTAGAGACA TGTCCAAAGA 
GAGAGATTTA TATATAAAAA TGGGTCTGTT GTTTGATTTG TTTCCATTTC 
AAATTTTTGT TTGTTTGGGT CCGTTTTAGG CGTTAGGTAT CTCTAAGCAT 
CATCGTTATG AGTGTGTCTG TAATAAAGGC TCTGTTGCCG CATGAGTACA 
AAGTGTTTTC TTAATATTGT AATATGCTTA TTACTTTCTT TTTATTCTTA 
AGTACTATTA AAAAAAAAAA AAAAA

Gene models with high sequence identity

  1. AT4G34588.1 [+] show detail - conserved peptide upstream open reading frame 2
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther PTHR19304:SF2 0.000309999945899369
HMMPfam bZIP transcription factor, bZIP-1 0.000000440000000000001
HMMPanther PTHR19304 0.000309999945899369
ProfileScan Basic-leucine zipper (bZIP) transcription factor 0
HMMSmart Basic-leucine zipper (bZIP) transcription factor 4.80000830876748e-18
PatternScan Basic-leucine zipper (bZIP) transcription factor 0

See the detailed result >

AT4G34588.1

Model type
Protein coding
Short Description
conserved peptide upstream open reading frame 2
Curator Summary
Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF2 represents a conserved upstream opening reading frame relative to major ORF AT4G34590.1
Computational Description
conserved peptide upstream open reading frame 2 (CPuORF2); LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: conserved peptide upstream open reading frame 5 (TAIR:AT1G75388.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-69-D05 introduced

  • F06411 - seed::increased size
  • F18438 - seed::increased length
  • F20733 - rosette leaf::decreased size / rosette leaf::increased width / rosette leaf::present in fewer numbers in organism

Mutant lines with disrupted or induced

5 mutant lines found