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  3. RAFL06-69-D11

RAFL06-69-D11

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03321)

full reading [+] show sequence

Nucleotide sequence: RAFL06-69-D11 - full reading 
AAACCACAAG AAAGAAAGTA AACATAAAAG TATGGGAAGG TCACCGTGCT 
GTGAGAAAGC TCACACAAAC AAAGGAGCAT GGACGAAAGA AGAGGACGAG 
AGGCTCGTCG CCTACATTAA AGCTCATGGA GAAGGCTGCT GGAGATCTCT 
CCCCAAAGCC GCCGGACTTC TTCGCTGTGG CAAGAGCTGC CGTCTCCGGT 
GGATCAACTA TCTCCGGCCT GACCTTAAGC GTGGAAACTT CACCGAGGAA 
GAAGACGAAC TCATCATCAA GCTCCATAGC CTTCTTGGCA ACAAATGGTC 
GCTTATTGCC GGGAGATTAC CGGGAAGAAC AGATAACGAG ATAAAGAACT 
ATTGGAACAC GCATATACGA AGAAAGCTTA TAAACAGAGG GATTGATCCA 
ACGAGTCATA GACCAATCCA AGAATCATCA GCTTCTCAAG ATTCTAAACC 
TACACAACTA GAACCAGTTA CGAGTAATAC CATTAATATC TCATTCACTT 
CTGCTCCAAA GGTCGAAACG TTCCATGAAA GTATAAGCTT TCCGGGAAAA 
TCAGAGAAAA TCTCAATGCT TACGTTCAAA GAAGAAAAAG ATGAGTGCCC 
AGTTCAAGAA AAGTTCCCAG ATTTGAATCT TGAGCTCAGA ATCAGTCTTC 
CTGATGATGT TGATCGTCTT CAAGGGCATG GAAAGTCAAC AACGCCACGT 
TGTTTCAAGT GCAGCTTAGG GATGATAAAC GGCATGGAGT GCAGATGCGG 
AAGAATGAGA TGCGATGTAG TCGGAGGTAG CAGCAAGGGG AGTGACATGA 
GCAATGGATT TGATTTTTTA GGGTTGGCAA AGAAAGAGAC CACTTCTCTT 
TTGGGCTTTC GAAGCTTGGA GATGAAATAA TATTGTCAAA TTTTAGGCGT 
AACTGTACAA AACTTTTGCC TAGATAATTT GAAAGTATAT CTTCAACTTG 
TATGAGAAAT TTAACTGGTG AATTATAATA TATAGAATTT GTTTTAAAAA 
AAAAAAAAAA AA

Gene models with high sequence identity

  1. AT4G38620.1 [+] show detail - myb domain protein 4
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Myb, DNA-binding 3e-15
HMMPfam Myb, DNA-binding 1.8e-16
superfamily Homeodomain-like 2.3e-23
superfamily Homeodomain-like 1.3e-13
Gene3D Homeodomain-related 4e-15
Gene3D Homeodomain-related 1.9e-18
ProfileScan HTH transcriptional regulator, Myb-type, DNA-binding 29.411
ProfileScan HTH transcriptional regulator, Myb-type, DNA-binding 17.051
HMMSmart SANT, DNA-binding 8.5e-14
HMMSmart SANT, DNA-binding 6.3e-18
HMMPanther R2R3-MYB TRANSCRIPTION FACTOR 4.3e-101
HMMPanther Myb transcription factor 4.3e-101

See the detailed result >

AT4G38620.1

Model type
Protein coding
Short Description
myb domain protein 4
Curator Summary
Encodes a R2R3 MYB protein which is involved in the response to UV-B. It functions as a repressor of target gene expression. One of its target genes encodes cinnamate 4-hydroxylase; mutants accumulate sinapate esters in their leaves. MYB4 binds to its own promoter and represses its own expression. Nuclear localization of MYB4 depends on the action of the beta importin SAD2.
Computational Description
myb domain protein 4 (MYB4); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 32 (TAIR:AT4G34990.1); Has 9208 Blast hits to 8453 proteins in 515 species: Archae - 0; Bacteria - 0; Metazoa - 855; Fungi - 510; Plants - 6018; Viruses - 3; Other Eukaryotes - 1822 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-69-D11 introduced

  • F09549 - rosette leaf::abnormal / stem::increased thickness / cauline leaf::epinastic
  • F12005 - Specific phenotypes were NOT observed.
  • F14129 - seed::increased size
  • F18435 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found