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  3. RAFL06-69-E15

RAFL06-69-E15

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03322)

full reading [+] show sequence

Nucleotide sequence: RAFL06-69-E15 - full reading 
AACGAATAAG AAAAGAAGAG AAACATCAAA CATCTTTGGT TTGCTTCCCT 
CGTACCCGTT CTTCATACAA GCACGCCTTT AATTATGGAT TGTCATAGAA 
AGACGTTCTT GTTGAAGTTT TTGTGCGTGG CATTTCTGTT AAACTACAGC 
AATGTTGGCT TTGTAGACGC AGCAACAAAC ATTGGCTTGA ACTACGGCCT 
CCTTGGAGAC AACCTCCCGC CTCCATCTGA AGTTATCAAC CTCTACAAGT 
CCTTAAGTGT TACCAATATT CGGATCTTCG ACACAACTAC GGATGTCCTT 
AACGCCTTTC GAGGGAATCG CAATATCGGA GTTATGGTAG ACGTGAAGAA 
CCAAGACTTA GAGGCTCTTT CGGTCAGCGA AGAAGCTGTT AACACCTGGT 
TCGTGACCAA CATTGAGCCT TACTTAGCTG ATGTCAACAT CACGTTCATT 
GCTGTCGGGA ACGAAGTCAT CCCAGGGGAA ATCGGCTCTT ATGTGCTACC 
CGTCATGAAA TCTCTCACCA ACATTGTCAA GTCGAGGAGT CTCCCGATCT 
TGATCAGCAC CACGGTGGCT ATGACCAACC TTGGCCAGTC ATATCCACCT 
TCGGCCGGAG ATTTCATGCC TCAAGCACGT GAACAACTTA CCCCGGTGCT 
GAAGTTTTTG TCTCAAACAA ATACGCCTAT CCTCGTCAAC ATCTACCCCT 
ACTTCGCATA TGCTGCTGAT CCTATCAACA TTCAGCTCGA CTATGCCATC 
TTCAACACCA ACAAGGTCGT GGTCCAAGAC GGGCCACTTG GTTATACAAA 
CATGTTCGAT GTGATATTTG ATGCGTTCGT ATGGGCAATG GAGAAAGAAG 
GTGTGAAGGA TTTACCAATG GTGGTAACAG AAACTGGATG GCCATCTGCT 
GGTAACGGAA ACTTAACGAC TCCAGATATC GCATCTATAT ACAATACCAA 
TTTTGTTAAA CATGTGGAAA GCGGTAAAGG GACGCCAAAG AGACCAAAGA 
GTGGCATTAG TGGATTTCTA TTTGCGACGT TCAATGAGAA TCAAAAGCCA 
GCGGGAACCG AACAAAATTT TGGGTTATAT AATCCAACAG ATATGAAGCC 
CATCTACAAG ATGTTTTGAT TTTTAGATTC TTGATTTTAT AGACTATCCC 
AAATCATTAG TAAATTAATG ATGCTCTAAT AGTTGTAATA GAGCGGGATA 
AAATCAAGAT CTACAACAAC ATTCATTTTA TATGTTGTAT GATCTTCTTA 
AATAAAAAAA CTTAAGAAGC AAAAAAAAAA AAAAAA

Gene models with high sequence identity

  1. AT5G20390.1 [+] show detail - Glycosyl hydrolase superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
PatternScan Glycoside hydrolase, family 17 0
superfamily Glycoside hydrolase, catalytic core 2.4e-93
Gene3D Glycoside hydrolase, subgroup, catalytic core 1.8e-97
HMMPfam Glycoside hydrolase, family 17 1.6e-95

See the detailed result >

AT5G20390.1

Model type
Protein coding
Short Description
Glycosyl hydrolase superfamily protein
Computational Description
Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-1,3-glucanase 5 (TAIR:AT5G20340.1); Has 2108 Blast hits to 2093 proteins in 124 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 0; Plants - 2096; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-69-E15 introduced

  • F02110 - Specific phenotypes were NOT observed.
  • F06835 - stem::abnormal / whole plant::decreased height / seed::present in fewer numbers in organism / stem::present in greater numbers in organism
  • F18229 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found