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  3. RAFL06-69-F17

RAFL06-69-F17

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03324)

full reading [+] show sequence

Nucleotide sequence: RAFL06-69-F17 - full reading 
TCTCTCTCTC CGGCGCTAAC GGGATGTCCT CACCATAACG CCGTTAAGTC 
TGGAACCCGT TTGAACGGAA TTATCAAAAC GGGAAGGAAT ATTCCGTTTG 
AATGGCTCTG GAACAGTTAG GATTAGGAGT GAGCGCCGTT GACGGTGGAG 
AGAACAGTAG CGCGCCGTCA AATGACGGTG GAGATGACGG CGTTAAGACG 
GCGAGACTTC CTCGTTGGAC GAGACAAGAG ATTCTGGTTC TGATTCAAGG 
GAAGAGAGTG GCGGAGAACA GAGTCCGGCG AGGGAGAGCG GCGGGTATGG 
CTCTCGGGTC GGGTCAAATG GAGCCTAAAT GGGCTTCTGT TTCGTCTTAC 
TGTAAACGTC ACGGTGTAAA TCGTGGGCCG GTTCAGTGCC GGAAAAGATG 
GAGCAATCTC GCCGGAGATT ATAAGAAGAT TAAAGAATGG GAGTCTCAGA 
TTAAGGAAGA GACTGAGTCC TATTGGGTTA TGAGGAATGA TGTTCGTAGA 
GAGAAGAAGC TTCCTGGTTT TTTCGATAAG GAGGTTTATG ATATTGTTGA 
CGGTGGTGTG ATTCCTCCGG CGGTTCCGGT TCTTTCGCTT GGATTGGCTC 
CGGCGTCAGA CGAGGGATTG TTGTCTGATT TAGATCGGAG AGAAAGTCCT 
GAGAAGTTGA ATTCTACTCC GGTGGCTAAA TCAGTTACTG ATGTTATAGA 
CAAAGAGAAG CAAGAAGCTT GTGTAGCAGA TCAAGGTAGA GTGAAAGAGA 
AACAGCCAGA AGCAGCAAAC GTGGAAGGTG GATCGACATC ACAAGAAGAG 
AGGAAGCGTA AACGGACATC TTTTGGTGAA AAGGAAGAAG AAGAAGAAGA 
AGGAGAAACA AAGAAGATGC AGAATCAGTT GATAGAGATA CTAGAAAGAA 
ACGGGCAGTT GTTGGCGGCA CAGCTTGAGG TTCAGAATTT AAACTTAAAA 
CTAGACAGAG AGCAAAGAAA AGATCACGGT GATAGCTTAG TCGCTGTTCT 
CAATAAGCTC GCTGATGCTG TGGCAAAAAT CGCGGATAAG ATGTAGATTT 
AGTAAAAGTT AGTTGTATAT CACTTTGGCC ATTACTTCTC ATTCTTCTTC 
TTCCTTTTTT TTCAATCATT TATCACCATT GTTGATTGAA TATTGATGCC 
ACCACAAGAG GTTATTATAC ACATCTTATA TAAACATTGA GATTAAGAAA 
AAAAAAAAAA AAA

Gene models with high sequence identity

  1. AT2G33550.1 [+] show detail - Homeodomain-like superfamily protein
    E-value: 0; Score: 99.92

 

InterPro Scan Digest

See the detailed result >

AT2G33550.1

Model type
Protein coding
Short Description
Homeodomain-like superfamily protein
Computational Description
Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors (TAIR:AT4G31270.1); Has 743 Blast hits to 735 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 25; Fungi - 8; Plants - 568; Viruses - 0; Other Eukaryotes - 142 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-69-F17 introduced

  • F20101 - rosette leaf::decreased size / rosette leaf::abnormal / stem::decreased thickness / whole plant::decreased height / sporophyte vegetative stage::decreased speed
  • F21921 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found