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  3. RAFL06-69-H14

RAFL06-69-H14

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07632)

full reading [+] show sequence

Nucleotide sequence: RAFL06-69-H14 - full reading 
GAAGGAAGCT CTCATCTTTT CACTCAGATC ACGTTCCCTG GGCTTATTCG 
CTTGTATCTG TTGATATACA AGATGGCATC TGCGACTCTG AGAAGGCGGC 
TTCATCACGG TGATGTAGAT GGGAGGAAGT ATGAACGCTA TGATGCAACA 
GACTCTGAAA CTTTAAGTGA ACCCTTGTTA GGAAGTAGTA GTACTGATAA 
TAGTAGAAAT GAGTACATTG AGGAGCGTAC TCTGGAGGAT ATTTGGGAAG 
AAGAACGGAA GAGACAGCAA GTTCACTGGA CGTTAATCTT TTCTCAGTTG 
ATTGCACAGT GGGCTCAGTG GATAGCCAAA ATAGTCTTTG GATCTGGCTC 
ACTTGTTGGG AGGTTTCTTT CTCTGCCTAC ATTTGGTCAA ATAGGTACTG 
GTGGGAGGCT TCTGCCACCA CCTCTTAGTA TGTTGCAGGA AGAAAGGCTG 
AGAAATATTA AGCGAAGAAT AGAAATCCCA TTTGATGGAT CTCGAATGGA 
GCATCAAGAT GCTCTTAGAC AACTATGGAG GCTAGCTTAT CCACAGAGAG 
AACTACCACC TCTTAAATCT GAACTCTGGA AGGAAATGGG TTGGCAAGGA 
ACAGACCCTT CAACAGATTT TCGAGGTGGA GGGTATATAT CACTGGAGAA 
TCTAATCTTC TTTGCGAAGA CCTATCCGGA ATCATTCCAG AGATTGTTAC 
ATAAACAAGA TGGAACTAGA GCGGAATGGG AATATCCTTT CGCGGTGGCT 
GGCATCAATA TCTCATTCAT GCTGGCACAA ATGTTAGATC TTCAATCAGG 
TAAACCATCA ACAATAGCCG GGATAAGATT CTTGGGATTT CTGGAAGAAG 
ACGAAATGGC ATTCGATAAT CTCTACTGTA TAGCTTTCCA AATGATGGAT 
GCACAATGGC TTGCTAGACG AGCTTCTTAC ATGGAATTCA ATGACGTCCT 
GAAATCGACG AGAGCACAAT TGGAACGTGA GCTGGCACTG GATGATGTTT 
CAAGCATCAC AGACTTGCCT GCTTTCAATC TTTTGTACAA ATAAATTGTT 
AAATTTCCTA CAATTTCTAT CTGTATTTAG ATAATAATTA TCTGAGAAAT 
TCAGTGTAAC AAATAATCAG TTTTTGCTGA AATTGCTCGG CAAGTATAAT 
TTCATCAGAA GATTTAATGA AAAAAAAAAA AAAAA

Gene models with high sequence identity

  1. AT3G03610.1 [+] show detail - ELMO/CED-12 family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
ProfileScan Engulfment/cell motility, ELMO 29.913
HMMPanther CELL MOTILITY PROTEIN RELATED 1.3e-146
HMMPanther ENGULFMENT AND CELL MOTILITY 1.3e-146
HMMPfam Engulfment/cell motility, ELMO 3e-51

See the detailed result >

AT3G03610.1

Model type
Protein coding
Short Description
ELMO/CED-12 family protein
Computational Description
ELMO/CED-12 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: phagocytosis; LOCATED IN: cytoskeleton; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Engulfment/cell motility, ELMO (InterPro:IPR006816); BEST Arabidopsis thaliana protein match is: ELMO/CED-12 family protein (TAIR:AT1G03620.1); Has 825 Blast hits to 825 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 481; Fungi - 44; Plants - 173; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-69-H14 introduced

  • F05301 - Specific phenotypes were NOT observed.
  • F08102 - Specific phenotypes were NOT observed.
  • F11837 - Specific phenotypes were NOT observed.
  • F18829 - rosette leaf::abnormal / stem::increased thickness / stem::abnormal
  • F26649 - Specific phenotypes were NOT observed.
  • F29916 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

10 mutant lines found