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  3. RAFL06-69-L03

RAFL06-69-L03

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03328)

full reading [+] show sequence

Nucleotide sequence: RAFL06-69-L03 - full reading 
AACATCAATC TCACAGGAAG GAAAGAAAGA AAGAAAGACG AGCCCTTTTT 
TCTTTCTAAA AATAGAAATA TGTCTCTAAA AGCCATTCAT GTCTCGGAAG 
TGCCAAGCCT CGACCACTTC CCTGAGAACC CGTCGCTCAT TTGCTCCTCT 
CGCAAAGCGA ATAACAAGTT TGTGGTGGTT GGCCATAGAG GACACGGCAT 
GAACATGTCG CAGTCGCCGG ATCTAAGGTT CTCTGCTCTC AAGGAGAACT 
CCATCCTCTC CTTTAATGCC GCTTCAAAAT TCCCTCTCGA CTTTATCGAA 
TTCGATGTTC AGGTCACCAG AGATGGCTGC CCAATCATAT TCCACGACGA 
CTTCATCTAC TCCGAGGAAC AGGGAGTGGT GTACGAGAAG AGGGTCACGG 
AGGTTTGCTT GTCGGAGTTC ATGTCCTACG GGCCACAGAG GGATACAGGC 
AAGACAGGAA AGCCTTTGCT GAGAAAGTCA AAGGAAGGGA AGATCCATAA 
GTGGAGCGTC GCAACCGACG ACTCTTTCTG TACTCTCCAA GAGGCTTTTG 
AGAAAGTAGA GAATCCAAAC CTCGGTTTCA ACATCGAACT CAAGCTTGAC 
GACAACGTCT TCTATTCCTC CGATCACCTC TCCCGTCTTC TCCTCCCAAT 
CTTGCAGGTC GTGTCTGATA TCGGAAACGA CAGAACTATC ATCTTCTCCA 
GCTTCCATCC TGATGCAGCC CTTCTTGTCA GGAAGTTGCA GACCACCTAC 
CCCGTATTCT TCTTGACCAA CGGAGGAACT GAGATGTACC ACGACACGAG 
AAGGAATTCG CTTGAGGAAG CAATCAAAGT ATGTTTAGAA GGAGGCCTCC 
AAGGGATTGT CTCGGAGGTG AAGGGAGTAT TCCGCAACCC CGCTCTTGTC 
AACAAGATAA AAGAATCCAA GCTCTCTCTG ATGACATACG GAAAGCTAAA 
CAATGTAGCC GAGGCGGTTT ACATGCAGCA TTTGATGGGG ATAGAGGGAG 
TGATAGTTGA TCATGTGGAG GAGATAACAG AGGCGGTGAG GGAGATGATG 
AAGCCATCCA ACAGAGATGC TGATGGTACT AAGCCAAAGC CTAACTTCTC 
TGACAGAGAG CTCTCCTTTC TTCTCAAGCT CATTCCCGAG TTGATACAAC 
ACTAAAACTA TCTCTTTTAG TTAGGATCTC TAGTTTCCCA AAATGTGATA 
GTGTTTTGTA TCGGGAAAAT TTGACAATGT GGGTGCTGCT ATCATGATTC 
ATGAGGTGAA AGCCCAAATG TTATGGAATA TATCTGTTTG CAAAAAAAAA 
AAAAAAA

Gene models with high sequence identity

  1. AT3G02040.1 [+] show detail - senescence-related gene 3
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D PLC-like phosphodiesterase, TIM beta/alpha-barrel domain 9.6e-33
HMMPanther RELATED TO MULTIFUNCTIONAL CYCLIN-DEPENDENT K 3.1e-94
superfamily PLC-like phosphodiesterase, TIM beta/alpha-barrel domain 1.3e-37
HMMPfam Glycerophosphoryl diester phosphodiesterase 1.7e-60

See the detailed result >

AT3G02040.1

Model type
Protein coding
Short Description
senescence-related gene 3
Computational Description
senescence-related gene 3 (SRG3); FUNCTIONS IN: phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity; INVOLVED IN: glycerol metabolic process, lipid metabolic process; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); BEST Arabidopsis thaliana protein match is: PLC-like phosphodiesterases superfamily protein (TAIR:AT5G41080.1); Has 1727 Blast hits to 1696 proteins in 532 species: Archae - 28; Bacteria - 1003; Metazoa - 245; Fungi - 173; Plants - 101; Viruses - 2; Other Eukaryotes - 175 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-69-L03 introduced

  • F13007 - Specific phenotypes were NOT observed.
  • F22922 - Specific phenotypes were NOT observed.
  • F24648 - Specific phenotypes were NOT observed.
  • F27218 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found