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  3. RAFL06-69-M11

RAFL06-69-M11

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03330)

full reading [+] show sequence

Nucleotide sequence: RAFL06-69-M11 - full reading 
AAGAAGTAGC AGAACAATGG CGACTTCTCA GCAATTTTTA AACCCTACAC 
TCTTCAAATC CTTAGCTTCC TCAAACAAAA ACTCATGTAC TCTCTGCCCA 
TCTCCTTTCT TGCAACTCAA GTCCGCCTCC ACAATTTTCA ATTACAAACC 
ACTTACTTCC TCCTCCGCCA CGATCATCAC ACGCGTCGCT GCATCATCCT 
CCGATTCAGG CGAGTCAATA ACCAGAGAGA CTTTCCACGG CCTCTGCTTC 
GTCTTGAAAG ACAACATCGA CACCGATCAA ATAATCCCCG CCGAGTACGG 
CACTCTCATC CCTTCGATTC CAGAAGATCG CGAGAAACTC GGCTCTTTCG 
CGCTTAACGG CTTACCAAAA TTCTACAACG AACGTTTCGT TGTTCCAGGA 
GAGATGAAAT CAAAGTACTC AGTCATCATC GGCGGCGATA ATTTCGGTTG 
CGGATCTTCC CGCGAACACG CTCCAGTTTG TCTCGGCGCG GCGGGAGCTA 
AAGCTGTGGT GGCGGAATCG TACGCTAGGA TCTTTTTCAG GAACTGTGTA 
GCTACAGGTG AGATTTTCCC GTTGGAATCG GAGGTTAGGA TTTGCGACGA 
GTGCAAAACA GGGGATGTGG TGACAATCGA ACACAAGGAA GACGGTAGTA 
GTTTGCTGAT CAATCATACG ACGAGGAAAG AATACAAACT GAAACCGCTC 
GGTGATGCCG GTCCGGTGAT CGACGCCGGT GGAATCTTCG CTTATGCAAG 
AAAAGCCGGC ATGATTCCTT CTGCTTGAAT GTAATCGGAT CCATAATTTA 
TCGGTTCTGA GTTTAATCCG GTTTGGTTTA TTTGGTTCGA GAACCGGTAC 
TAACGAAATA AATTATTACC AAACCAAAAT TTCTTCTGGT TCGACTTTGT 
TTGCCACGTG GAAACAGCGA TATAAACAAG TGCCCAAAAA GGCTTGCAAT 
GGTTTTTGTA AAAAAAAAAA AAAAA

Gene models with high sequence identity

  1. AT3G58990.1 [+] show detail - isopropylmalate isomerase 1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Aconitase A/isopropylmalate dehydratase small subunit, swivel 4.9e-18
Gene3D Aconitase/3-isopropylmalate dehydratase, swivel 4.2e-26
HMMPanther 3-isopropylmalate dehydratase, small subunit-like 1.1e-52
HMMPanther Aconitase-like core 1.1e-52
superfamily Aconitase/3-isopropylmalate dehydratase, swivel 3.1e-38

See the detailed result >

AT3G58990.1

Model type
Protein coding
Short Description
isopropylmalate isomerase 1
Computational Description
isopropylmalate isomerase 1 (IPMI1); FUNCTIONS IN: hydro-lyase activity, 3-isopropylmalate dehydratase activity; INVOLVED IN: leucine biosynthetic process, metabolic process; LOCATED IN: plastid; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: 3-isopropylmalate dehydratase, small subunit-like (InterPro:IPR012305), Aconitase A/isopropylmalate dehydratase small subunit, swivel (InterPro:IPR000573), Aconitase/3-isopropylmalate dehydratase, swivel (InterPro:IPR015928), Aconitase-like core (InterPro:IPR015937); BEST Arabidopsis thaliana protein match is: Aconitase/3-isopropylmalate dehydratase protein (TAIR:AT2G43090.1); Has 8940 Blast hits to 8939 proteins in 2288 species: Archae - 372; Bacteria - 5509; Metazoa - 6; Fungi - 358; Plants - 71; Viruses - 0; Other Eukaryotes - 2624 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-69-M11 introduced

  • F03512 - Specific phenotypes were NOT observed.
  • F12311 - rosette leaf::dark green / rosette leaf::decreased width / stem::increased thickness / cauline leaf::decreased width / stem::abnormal / cauline leaf::epinastic / cauline leaf::dark green / stem::abnormal / rosette leaf::increased size / rosette leaf::epinastic / rosette leaf::abnormal / rosette leaf::abnormal / cauline leaf::increased size / stem::increased thickness / fruit::increased thickness / stem::abnormal
  • F21312 - Specific phenotypes were NOT observed.
  • F30540 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found