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RAFL06-69-N06

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03331)

full reading [+] show sequence

Nucleotide sequence: RAFL06-69-N06 - full reading 
ATACAACAAA AAGTCATGGC TTCTTCTTAC ACACTTATGC TCTTCCTTTG 
CCTCTCCATC TTCCTTATAG CTTCCACTGA GATGATGGCG GTGGAAGGAA 
GAATTTGCGA GAGGAGAAGC AAGACATGGA CAGGGTTTTG TGGCAACACT 
CGTGGCTGTG ACAGTCAGTG TAAGAGATGG GAACGTGCTT CACACGGGGC 
TTGTCACGCT CAGTTCCCGG GTTTCGCATG TTTCTGCTAC TTCAATTGCT 
GAAGCAAGCA TACTCTTAAG AGTTGTGTGA ATCTTCTTCA ACGGTCACTT 
TTATATCTTG TAGCAAATCC TAATCCCTAT ATGTCAAAAC CGTTATCTTT 
AGCTTGGGTT TCAGTAATAA AAATTCCCCT TTGGTTTTTG GGAATTTTCT 
TTGATAAAAT ATATAATAAG AGACTGGCAA GGCTATCTTC TTCGAAAAAA 
AAAAAAAAAA

Gene models with high sequence identity

  1. AT1G19610.1 [+] show detail - Arabidopsis defensin-like protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Scorpion toxin-like 8.4e-14
HMMPfam Gamma thionin 1.5e-12
PatternScan Gamma thionin 0
BlastProDom Low-molecular-weight cysteine-rich family 0.002
HMMSmart Knottin 1.3e-10
Gene3D no description 2.6e-17

See the detailed result >

AT1G19610.1

Model type
Protein coding
Short Description
Arabidopsis defensin-like protein
Curator Summary
Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.
Computational Description
PDF1.4; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Gamma thionin (InterPro:IPR008176), Low-molecular-weight cysteine-rich family (InterPro:IPR020191), Knottin (InterPro:IPR003614); BEST Arabidopsis thaliana protein match is: plant defensin 1.3 (TAIR:AT2G26010.1); Has 153 Blast hits to 153 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 152; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-69-N06 introduced

  • F01802 - seed::increased size
  • F23815 - Specific phenotypes were NOT observed.
  • F27712 - Specific phenotypes were NOT observed.
  • F29619 - Specific phenotypes were NOT observed.
  • F30205 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

5 mutant lines found