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RAFL06-69-O11

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03333)

full reading [+] show sequence

Nucleotide sequence: RAFL06-69-O11 - full reading 
ACACCAAACC TCTCTCTCTA TCTCTGTCCA AATAAGAACA AAAAAAGACA 
AGATTCAGAA AAAAATGGAG GTTTCGATGA GAAAGCCTTA TTTCATAGAA 
GAAGAAGACG ATGGTTTTGT TTCTTTATCT GAGATGGAAG CTGGAGTTTC 
AAGTCCTTCT TGTTACAACT ATCCTCAGAG TTATTATTAT AACCATCATC 
ATCATCAGTA CTCTGTTTCA TCTCCCAGAT CTGGAAAATT TCATGATTTT 
AGATTCGACA ATAGCTATTA CGGTTATGGA CAGCCTCATT TCTTGGACTC 
TTGCTTCCTC TGCAAGAAAC GTCTTGGTGA TAACAGAGAC ATCTTCATGT 
ACAGAGGAGA CACACCGTTC TGTAGTGAAG AGTGTAGAGA AGAACAGATA 
GAAAGAGACG AAGCAAAAGA GAAGAAACAG AGTCTGTCTA CATCTGTGAA 
AGCTATGAGA AGAAATGAAA AGCGAAGCTC TTCTTCTTCT CCAACTAGAT 
CTCGTAACTA TGCTTTCCGC ACTGGAACTG TTGCTGCTGC CTAATTTAAA 
GTTATAAAGG AAAAAAAGGG AGATAGAGAA TCCATTAACG CTCATATTGC 
TGTAAAAGCT AGTTAATGGA TTTATGGGTT TTTTCTTCAT CTAAAGATCT 
TTCTTTAGTT TGAATTTGAA TACTAAACCA AAAAAAAAAT GGTTAGGGAA 
AAAGAAAAAA AAAAAAGCGA AGAAACCTCT CTTTTTTTAA AGGGTTTGTC 
CTTTCTTTGT TTTATTTTCA TGTTTATTAG TTTTGTTTTT CTTGAAGAAA 
AATATATATA TGCAATTTTG GGTGCAAAAA AAAAAAAAAA

Gene models with high sequence identity

  1. AT4G17670.1 [+] show detail - Protein of unknown function (DUF581)
    E-value: 0; Score: 99.64

 

InterPro Scan Digest

Program Description E-value
Coil coiled-coil 0
HMMPfam Protein of unknown function DUF581 7.4e-26

See the detailed result >

AT4G17670.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF581)
Computational Description
Protein of unknown function (DUF581); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF581 (InterPro:IPR007650); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF581) (TAIR:AT5G47060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-69-O11 introduced

  • F13738 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

3 mutant lines found