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  3. RAFL06-69-O22

RAFL06-69-O22

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17218)

full reading [+] show sequence

Nucleotide sequence: RAFL06-69-O22 - full reading 
CCCCGGTCTC CTCTCCACCA AGTGAATCTC TTTCTCTCTC TCTTTTTCTC 
CGCGGAAGGA ATCTCTTCTT CTGGTTGCGT TTGAGTCCGT ACGAAAACAA 
AAGAAAAGAG AGAGATGGCG GAAGAGAAGA AAGCTCCAAT CAGTGTCTGG 
ACTACCGTGA AGCCCTTCGT CAATGGCGGT GCCTCTGGTA TGCTCGCTAC 
TTGCGTTATC CAGCCGATCG ACATGATTAA GGTGAGGATT CAACTTGGTC 
AGGGATCTGC AGCCAGTATA ACCACCAACA TGCTTAAGAA TGAGGGCGTT 
GGTGCCTTCT ACAAGGGATT ATCTGCTGGG TTGCTGAGGC AAGCAACTTA 
CACGACAGCC CGTCTTGGAT CATTCAAGTT GCTGACTGCA AAGGCAATTG 
AGTCTAATGA TGGAAAGCCT CTACCGCTGT ATCAGAAGGC ACTATGTGGT 
CTGACAGCTG GTGCTATTGG TGCTTGCGTC GGTAGTCCAG CCGATCTAGC 
ACTTATCAGA ATGCAGGCCG ATAATACTTT GCCGCTAGCT CAGCGCAGGA 
ATTATACCAA TGCTTTCCAT GCGCTTACCC GTATTAGCGC TGATGAGGGA 
GTTTTAGCAC TTTGGAAAGG GTGTGGGCCC ACTGTGGTCA GAGCTATGGC 
TTTGAACATG GGAATGCTTG CATCTTATGA TCAAAGTGCT GAATACATGA 
GAGATAATCT TGGTTTCGGG GAGATGTCTA CGGTCGTAGG AGCAAGTGCT 
GTTTCTGGGT TCTGCGCTGC GGCTTGCAGT CTGCCATTTG ACTTTGTCAA 
AACTCAGATT CAGAAAATGC AACCGGATGC TCAAGGAAAG TATCCATACA 
CAGGTTCGCT CGATTGTGCG ATGAAAACCT TAAAAGAAGG AGGACCTCTG 
AAATTTTACT CGGGTTTCCC AGTTTACTGT GTCAGGATTG CCCCTCACGT 
CATGATGACA TGGATCTTCC TAAACCAGAT TACGAAATTT CAAAAGAAGA 
TTGGTATGTG AGGAACAAAT ACAGCAGCAA AAAAATAAGA TGAGAAGAAC 
GAAAACACAA TTGGAATTGT GTTCATTTGC TTTTTAATCA TATACATAAC 
CTGCCTTAAA AGCATATTAT TGTAGCTGTT TGAACTTTAA TTTTTTGCTA 
AAAAAAAAA

Gene models with high sequence identity

  1. AT5G19760.1 [+] show detail - Mitochondrial substrate carrier family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Mitochondrial substrate/solute carrier 8.9e-15
HMMPfam Mitochondrial substrate/solute carrier 1.1e-19
HMMPfam Mitochondrial substrate/solute carrier 6.5e-18
FPrintScan Mitochondrial carrier protein 0.0001
FPrintScan Mitochondrial carrier protein 0.0001
FPrintScan Mitochondrial carrier protein 0.0001
FPrintScan Mitochondrial carrier protein 0.0001
HMMPanther MITOCHONDRIAL 2-OXOGLUTARATE/MALATE CARRIER P 1.8e-163
HMMPanther Mitochondrial substrate carrier 1.8e-163
superfamily Mitochondrial substrate carrier 1.2e-69
ProfileScan Mitochondrial substrate/solute carrier 19.574
ProfileScan Mitochondrial substrate/solute carrier 23.607
ProfileScan Mitochondrial substrate/solute carrier 17.643

See the detailed result >

AT5G19760.1

Model type
Protein coding
Short Description
Mitochondrial substrate carrier family protein
Computational Description
Mitochondrial substrate carrier family protein; FUNCTIONS IN: oxidative phosphorylation uncoupler activity, binding; INVOLVED IN: transport, mitochondrial transport, transmembrane transport; LOCATED IN: in 6 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: dicarboxylate carrier 2 (TAIR:AT4G24570.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-69-O22 introduced

  • F10401 - Specific phenotypes were NOT observed.
  • F13443 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found