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RAFL06-70-B02

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03335)

full reading [+] show sequence

Nucleotide sequence: RAFL06-70-B02 - full reading 
AAGCACATTC CAAATCATTT TCTTACCACT CAAAGAGTGC GCACTCATTA 
TCATCGTTTG AAACTAAACA TGGCGACGGA GAAAAGCAAG ATTCTGGTGA 
TCGGAGGAAC TGGTTACATC GGGAAATTCC TAGTAGAAGC GAGCGCCAAA 
GCTGGCCACT CCACATTCGC TCTCGTTAGA GAAGCAACTC TATCCGATCC 
TGTCAAGGGC AAAACCGTCC AGAGTTTCAA AGATCTCGGC GTCACAATAC 
TACACGGAGA TTTGAATGAT CACGAGAGCT TAGTGAAGGC TATTAAACAG 
GTTGATGTGG TGATATCTAC CGTTGGGAGC ATGCAAATCT TGGATCAAAC 
CAAGATCATT TCCGCCATCA AAGAAGCCGG TAATGTCAAG AGATTCTTGC 
CGTCTGAGTT TGGGGTGGAT GTGGATAGGA CGAGTGCGGT TGAGCCAGCT 
AAATCGGCTT TTGCAGGGAA GATACAGATC AGGAGAACCA TCGAAGCGGA 
AGGAATACCA TACACTTACG CTGTTACCGG TTGCTTTGGT GGTTACTACT 
TGCCAACATT GGTTCAGTTC GAGCCTGGTC TCACTTCTCC TCCTAGAGAC 
AAAGTCACCA TTCTTGGCGA TGGAAATGCC AAAGCTGTGA TCAACAAAGA 
GGAAGATATT GCTGCTTACA CGATCAAGGC GGTGGATGAT CCTAGGACTC 
TGAACAAAAT CCTATACATT AAGCCTTCTA ACAACACTTT ATCGATGAAC 
GAAATAGTCA CCTTGTGGGA GAAAAAGATT GGCAAGTCTC TTGAGAAGAC 
TCACCTCCCA GAGGAACAAC TACTTAAAAG CATCCAAGAG TCTCCGATTC 
CCATCAATGT TGTTCTGTCG ATAAACCACG CGGTGTTTGT GAATGGAGAT 
ACCAATATCA GTATAGAGCC TTCCTTTGGT GTGGAAGCCT CTGAGCTTTA 
CCCTGATGTC AAGTACACAA GTGTTGACGA GTATCTCAGT TATTTCGCTT 
GATGAACTTC ATTATAAACG TAATTTACCA CCATGACGCG CTAGTTTCAT 
GTTCTGTATC AATAAAAGAA TGGTTCTTGT AATGGTGAAT GTGTGTGTGT 
ATGTGTGACT AATCAGTAAT CACAGTGCTT TACCTCTGTT TCCGAGCTTC 
CCAAGAAATA TGAATTAGTA ATATATAACT AAAAAAAAAA AAAAAA

Gene models with high sequence identity

  1. AT1G75280.1 [+] show detail - NmrA-like negative transcriptional regulator family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D NAD(P)-binding domain 7.2e-20
superfamily NAD(P)-binding domain 3.1e-64
HMMPanther NAD DEPENDENT EPIMERASE/DEHYDRATASE 9.3e-13
HMMPfam NmrA 3.1e-91

See the detailed result >

AT1G75280.1

Model type
Protein coding
Short Description
NmrA-like negative transcriptional regulator family protein
Curator Summary
isoflavone reductase, putative, identical to SP:P52577 Isoflavone reductase homolog P3 (EC 1.3.1.-) {Arabidopsis thaliana}; contains Pfam profile PF02716: isoflavone reductase. Involved in response to oxidative stress.
Computational Description
NmrA-like negative transcriptional regulator family protein; FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: response to oxidative stress, response to cadmium ion, response to cyclopentenone; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), NmrA-like (InterPro:IPR008030); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT1G75290.1); Has 2708 Blast hits to 2703 proteins in 629 species: Archae - 36; Bacteria - 1150; Metazoa - 16; Fungi - 663; Plants - 623; Viruses - 7; Other Eukaryotes - 213 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-70-B02 introduced

  • F06610 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found