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RAFL06-70-B19

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03336)

full reading [+] show sequence

Nucleotide sequence: RAFL06-70-B19 - full reading 
AAGAAGATAA CAATTACTAC AACTGTGCGC TCTTGTTATC TCTGCTTTGA 
AGTGAAATCA GCTTTGGCTA TGGCTTCTTC GACAGCTTTG TCTCTCTCAT 
GGAGCTCCTC TCCTTGTTGG TCACACAGCT TCAATGGCGG TGCAAATGAA 
ACCCTAAAAG TATCTGAGCG AAGGTTCAAT TTTGAAGTTG TTTCCCAGAA 
GAAAGCTAAG AAACTTCGCA AGGTAATTTT GAAAGAGGAT GTGACGGATT 
TGGGTAAGCA AGGGCAATTA CTTGATGTGA AAGCTGGATT TTTCAAAACT 
TCCTCTTGCC TACTGGAAAG GCTCAGCTTA TGACTCCACT TCTGCTCAAG 
GAATTGAAGA TGGAAGACGA ACGGATTGAG GCAGAGAAGC AAAGGGTGAA 
AGAAGAGGCA CAACAACTGG CGATGGTATT CCAAACCGTT GGTGCTTTCA 
AGGTTAAACG CAAAGGCGGT AAAGGCAAAC TGATATTTGG ATCTGTCACA 
GCTCAAGACC TCGTCGACAT CATCAAATCA CAGCTCCAAA AGGACATCGA 
CAAACGCCTT GTCTCTCTCC CAGAAATCCG TGAAACCGGA GAATACATAG 
CCGAACTCAA GCTTCACCCC GATGTCACTG CTCGAGTTAA GATCAATGTT 
TTCGCTAACT AAACCTTCAA CGATTCAAGA CTCCTACTGC ATCCCAAGGA 
ACGTATAGAG AGGGAAAAGA GAGTAGCCTC TTGTGGTGAG GATTGAAGGT 
TGTGAAGTTT TTCCTTTAGA TTGTTTGATG CATTTGTATT TTTGCTATTT 
TTGGAATCTG GAAACGCTAA AAGTATAATA TTCTCTTGCA AGTTATGATA 
TTTACTTGAA GTTAAAAAAA AAAAAAAAAA AAAATAAAAA AAAAAAAAAA 
A

Gene models with high sequence identity

  1. AT3G44890.1 [+] show detail - ribosomal protein L9
    E-value: 0; Score: 99.88

 

InterPro Scan Digest

Program Description E-value
Coil coiled-coil 0
HMMTigr Ribosomal protein L9, bacteria/chloroplast 6.6e-19
HMMPanther 50S RIBOSOMAL PROTEIN L9 2.5e-52
HMMPanther Ribosomal protein L9 2.5e-52
HMMPanther 50S RIBOSOMAL PROTEIN L9 1.9e-43
HMMPanther Ribosomal protein L9 1.9e-43
HMMPfam Ribosomal protein L9, N-terminal 1.6e-08
HMMPfam Ribosomal protein L9, C-terminal 5.3e-22
Gene3D Ribosomal protein L9, C-terminal 3.4e-15
superfamily Ribosomal protein L9, C-terminal 4.6e-21

See the detailed result >

AT3G44890.1

Model type
Protein coding
Short Description
ribosomal protein L9
Curator Summary
Plastid ribosomal protein CL9
Computational Description
ribosomal protein L9 (RPL9); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, plastid large ribosomal subunit, chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L9 (InterPro:IPR000244), Ribosomal protein L9, bacteria/chloroplast (InterPro:IPR020594), Ribosomal protein L9/RNase H1, N-terminal (InterPro:IPR009027), Ribosomal protein L9, N-terminal (InterPro:IPR020070), Ribosomal protein L9, C-terminal (InterPro:IPR020069); Has 7269 Blast hits to 7269 proteins in 2533 species: Archae - 0; Bacteria - 5393; Metazoa - 2; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 1796 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-70-B19 introduced

  • F01805 - Specific phenotypes were NOT observed.
  • F13401 - seed::increased size
  • F14437 - Specific phenotypes were NOT observed.
  • F15313 - Specific phenotypes were NOT observed.
  • F16719 - Specific phenotypes were NOT observed.
  • F17349 - Specific phenotypes were NOT observed.
  • F19904 - Specific phenotypes were NOT observed.
  • F24808 - Specific phenotypes were NOT observed.
  • F25005 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

10 mutant lines found