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RAFL06-70-C03

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07642)

full reading [+] show sequence

Nucleotide sequence: RAFL06-70-C03 - full reading 
ATAGATCGTC AAAACCTGCC TAATAATGTC TTATCCTCAC ATAACACCTT 
TTTTTTTATC TCCATCTCTC TGTTACTTAG AACCCTCCAT TCATATATAC 
ACTAGGTGCC AAATTTGGTC ACGTGTTTGG CCCTTCACGT TCTTGACTCT 
TAGCTAGATC CTTGTTTCTT GTGGATTCTT GAATCTTAAA TCTTGAATCC 
CTGAGTTTTG TTGGTTCTTG ATTTTGATTC TCGATTCTTT AGTCATTGAT 
TATTCGATCT TTGTTGGTTT TTGATTAGAG ATTTAATTAG CATATTTATG 
TACTAATAAT TGAATAAATG GGAACAGGGG AGATATGATA CTTACAAGAA 
GAAAAGTGGA CAGATTCCTC GGTTTGGAGA ATGGGAAGAA GCAAATGAGA 
TGCCAATAAC ACAATACTTT GAGAATCCAA GACAAGCTGA AGCCTTAAAG 
CTTGCTTCTC ACCATCCCCG TCCACGTCAC CTCCACGCTC AAAGACAGAC 
GGCGGGGACG AAGGAGAAAA GAGGACCACA AAGGCGTGTG CGTGACGTCA 
GTGCACAGTC GGACAAGTAT TACATTGACG TCAACGGTGT TAAGCAGTTC 
AAAAACGACG TTGCTCTGAC TTGTAAGCCA CCTAAGCCCG TTGATGAAGA 
TCTCTACAAG ATTCCTCCTG AGTTTATCCA TTCTTCAACA AGGAAGAGAA 
GGCCTAGCTT TTTAGCTTGT TTGGTTCCAT GCGCATGAAT CGAAAAGGAA 
GAGCGAAGAA GAAGAAGAAA AAGTAGGATC ATGAATGAAT AATGTAATTT 
GTTTTTTGTT TTTGTAATTT CATCCTAATA TACAGATATG ATATATACGT 
GGTTTGACAA AAAAAAAAAA AAAA

Gene models with high sequence identity

  1. AT5G18310.1 [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...
    E-value: 0; Score: 99.81

 

InterPro Scan Digest

See the detailed result >

AT5G18310.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-70-C03 introduced

  • F10242 - Specific phenotypes were NOT observed.
  • F13141 - seed::increased size / seed::increased length
  • F25541 - Specific phenotypes were NOT observed.
  • F26814 - rosette leaf::present in greater numbers in organism / stem::abnormal

Mutant lines with disrupted or induced

4 mutant lines found