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  3. RAFL06-70-C23

RAFL06-70-C23

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17219)

full reading [+] show sequence

Nucleotide sequence: RAFL06-70-C23 - full reading 
CCCGAAAACA CAACACAACA CAATATCTTT CAACTCAAAA TCTTTTTCAT 
TTCTCTGTAT CCTCCTCATA TTTTTATTCT TTTGTAATGA CAGGTTGCTT 
TAGCTTGTCT GAAGCATTAG AACGAACTTA CAAATCCGGG TTCAAAAGAT 
CCGGTCTACG ACCCGTAACC ATCGACTTGA AAGATGGAAC CGTAGTCAAC 
TTTTGGGTAT CCAAAACCAA ACCCGAATCC AAACCCAAAC CTAATCTCCT 
CCTCATCCAC GGCCTCGGAG CTACTGCCAT CTGGCAATGG TACGACGTAG 
CTCGCCGTCT CTCACGTTAT TTCAACCTCT ACATCCCCGA CCTAGTCTTC 
TTCGGCGGAT CTTCCACGAC CCGACCCGAA AGATCCGATA TTTTCCAAGC 
CCAAACACTC ATGCGGGCCT TAGAAGCCCA ATCCGTCAAA AAGTTTAGCC 
TCGTCGGTCT TAGCTACGGC GGATTCGTTG GTTATCGAAT GGCGTCGATG 
TACGCAGACG CGGTGGAGAA GGTGGTGATA TGCTGCGCCG CCGTGTGCGT 
GGAGGAGAAA GATATGAAAG CCGGTGTTTT CAAGGTGTCG GATCTTGATG 
AAGCTTCGAA GATTCTTGTG CCGGAGTCTG TGAAAAAGCT CCGGGAACTT 
ATGGGTTACA TATTTTACAA ACCGGCGTTG GCAAGACTGG TTCCTACTTG 
TCTTCTCCAT GATTTCATCG AACATGCTTT GACAAGAGAT AATATGGAAG 
AGAAGAGAGA ACTGATCAAA GCCATACCAA AAGACAGAAT AATCTCAGAG 
ATTCCAAAGC TCAAACAGCC AACATTGATA ATATGGGGAG AGCATGATCA 
AGTGTTCCCA TTGGAGATGG GCAAGAGACT TGAGAAGCAT GTAGGAGATA 
ATGGGAAACT CGTTATCATC AAGAGAACTG GTCATATCTT TAACTTCGAG 
AAACCTAAAA AGTTTATCAA ACTTCTCAAA TCTTTTCTTC TAGAGACTAG 
TAAACCACAG ATTCCTGTCT CTAATGTTTG ATTCTTAGTC ATCGTTTTGA 
AGATCCTCTC ATAAGTAATT TCCAAGGATT AATAACATAT ATATCATTTT 
CACATTACCA AAAAAAAAA

Gene models with high sequence identity

  1. AT1G78210.1 [+] show detail - alpha/beta-Hydrolases superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
FPrintScan ABHYDROLASE 3.5e-10
FPrintScan ABHYDROLASE 3.5e-10
FPrintScan ABHYDROLASE 3.5e-10
FPrintScan ABHYDROLASE 3.5e-10
FPrintScan Epoxide hydrolase-like 8.7e-05
FPrintScan Epoxide hydrolase-like 8.7e-05
FPrintScan Epoxide hydrolase-like 8.7e-05
FPrintScan Epoxide hydrolase-like 8.7e-05
Gene3D no description 5e-44
superfamily alpha/beta-Hydrolases 8.3e-54
HMMPfam Alpha/beta hydrolase fold-1 2.8e-06
HMMPfam Alpha/beta hydrolase fold-1 2.3e-09
HMMPanther ABHYDROLASE DOMAIN CONTAINING 6 5.9e-128
HMMPanther ALPHA/BETA HYDROLASE RELATED 5.9e-128

See the detailed result >

AT1G78210.1

Model type
Protein coding
Short Description
alpha/beta-Hydrolases superfamily protein
Computational Description
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Epoxide hydrolase-like (InterPro:IPR000639), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G09430.1); Has 8308 Blast hits to 8306 proteins in 1517 species: Archae - 98; Bacteria - 5942; Metazoa - 236; Fungi - 70; Plants - 380; Viruses - 0; Other Eukaryotes - 1582 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-70-C23 introduced

  • F23818 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

2 mutant lines found