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  3. RAFL06-70-D03

RAFL06-70-D03

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03338)

full reading [+] show sequence

Nucleotide sequence: RAFL06-70-D03 - full reading 
GTCGTTTAGT CTTTCTTCTA GAACACAAAA TCGATTTTGA GCTTTAACGG 
AAAGAGACGA CAATGGCGGG TCGGTTCTTC GATAACGTGA TGCCTGATTT 
CGTGAAGGAG AAGGAAAGTG TATCTGGAGG AGATACGCTT AGGAATCTGC 
TTGCTATGCC GTATTCGTCT CTCTCGCAGC AGCTCAAGCG GTCCGCTTTG 
GATCTCAAAG AAACCGTAGT GATTGAAACT TGGGGTTTTA GTGGACAGAC 
TGTTGAAGAC TTCACTCTTT ACTCTGGAAC TCTTGGAGCT GCGTTTTTAC 
TCTTTAGAGC TTATCAGGTT ACTGGCAACG CCAACGATCT TTCCCTCTGC 
TTGGAAATCG TCAAAGCTTG TGATACTGCT TCTGCTTCCT CAGGGGATGT 
TACTTTTCTC TGTGGCCGAG CTGGTGTTTG TGGTCTTGGC GCTGTTGCAG 
CTAAGCTTTC TGGTGAGGAA GATTTGCTCA ATTACTATTT GGGACAATTT 
CGTCTGATAA GACTATCTAG TGATCTTCCT AACGAGCTTT TGTATGGAAG 
AGTTGGTTAT CTATGGGCTT GTCTGTTTAT CAACAAGTAC ATCGGCAAAG 
AAACTTTGTC TTCAGATACC ATCCGCGAAG TTGCTCAGGA GATTATCAAG 
GAAGGAAGAT CAATGGCTAA GAAAGGAAGC TCACCGCTTA TGTTTGAATG 
GTATGGCAAA AGGTACTGGG GTGCAGCACA TGGACTTGCT GGTATTATGC 
ACGTATTGAT GGATGTTCAG CTGAAGCCTG ACGAGGCAGA AGATGTGAAG 
GGAACCCTTA AGTATATGAT CAAGAATCGG TTTCCAAGTG GAAATTACCC 
TGCTAGTGAA GAGGATAAGA AGAAAGATAT TCTTGTGCAT TGGTGTCATG 
GAGCCCCTGG GATTGCCCTC ACACTTGGGA AGGCGGCTGA GGTTTTTGGG 
GAGAGAGAGT TTCTGGAAGC GAGTGCAGCT GCAGCAGAGG TGGTTTGGAA 
CCGTGGATTG CTCAAGCGCG TGGGGATCTG TCATGGAATA AGTGGGAACG 
CATATGTTTT TCTTGCGCTT TACAGAGCTA CGGGAAGGAG TGAGTATCTA 
TACCGTGCAA AAGCCTTTGC CAGTTTCCTG CTTGATAGAG GCCCCAAGTT 
ACTCTCAAAA GGAGAAATGC ATGGAGGTGA TAGTCCTTAT TCCTTGTTTG 
AAGGCGTTGC AGGCATGGCC TATCTCTTCC TTGACATGGT CGACCCATCT 
GAAGCCAGGT TCCCAGGTTA CGAGCTTTAA ACTTCTTGAT CGATAACAAT 
CTCCGTCCAT CAAATCCTTC TCTCTTGTTA TGGAGGATGC ACAAGGTAAG 
AGAGGGTGTG AGTGTATGTG TGTTTAGTAC TAGCAAAATC TTCTTGTTGT 
TTGATGGTGA ATAAGTTTGA GTTGATATAT AGCCGAACTG TCCGGAGAGC 
CTGTAACTTT ATGAGTGTTA GAAGGAGAGT GTGAAACATG AAGTGAACAC 
AAAGGTTCTG TCATTTCTGT ATATATTGTC TTTTGAGTTG AGTATCAAGA 
AAAAAAAAAA AAAAA

Gene models with high sequence identity

  1. AT2G20770.1 [+] show detail - GCR2-like 2
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther LANC-LIKE 1.4e-280
HMMPanther LANC-LIKE PROTEIN 1.4e-280
HMMPfam Lanthionine synthetase C-like 2.1e-99
superfamily Six-hairpin glycosidase-like 5.8e-13
FPrintScan LanC-like protein superfamily 2.1e-49
FPrintScan LanC-like protein superfamily 2.1e-49
FPrintScan LanC-like protein superfamily 2.1e-49
FPrintScan LanC-like protein superfamily 2.1e-49
FPrintScan LanC-like protein superfamily 2.1e-49
FPrintScan LanC-like protein superfamily 2.1e-49
FPrintScan LanC-like protein, eukaryotic 2.1e-17
FPrintScan LanC-like protein, eukaryotic 2.1e-17
FPrintScan LanC-like protein, eukaryotic 2.1e-17
FPrintScan LanC-like protein, eukaryotic 2.1e-17
FPrintScan LanC-like protein, eukaryotic 2.1e-17

See the detailed result >

AT2G20770.1

Model type
Protein coding
Short Description
GCR2-like 2
Curator Summary
Encodes a protein with reported similarity to GCR2 a putative G protein coupled receptor thought to be an ABA receptor.GCL2 also has similarity to LANCL1 and LANCL2, human homologs of bacterial lanthionine synthetase.
Computational Description
GCR2-like 2 (GCL2); FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: extrinsic to membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: LanC-like protein, eukaryotic (InterPro:IPR020464), Six-hairpin glycosidase-like (InterPro:IPR008928), Lanthionine synthetase C-like (InterPro:IPR007822); BEST Arabidopsis thaliana protein match is: G protein coupled receptor (TAIR:AT1G52920.1); Has 689 Blast hits to 684 proteins in 212 species: Archae - 0; Bacteria - 201; Metazoa - 271; Fungi - 68; Plants - 112; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-70-D03 introduced

  • F05251 - Specific phenotypes were NOT observed.
  • F10646 - Specific phenotypes were NOT observed.
  • F13449 - Specific phenotypes were NOT observed.
  • F20821 - Specific phenotypes were NOT observed.
  • F26314 - Specific phenotypes were NOT observed.
  • F27823 - Specific phenotypes were NOT observed.
  • F29019 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

9 mutant lines found