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  3. RAFL06-70-F02

RAFL06-70-F02

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17220)

full reading [+] show sequence

Nucleotide sequence: RAFL06-70-F02 - full reading 
CCCGAACTCA CTTCTCTCTC TCTCTCTCCG CCTCCTTTTA AGACCAAATC 
TCTCTCTACC TCTATCTCTC TCTCCGCCAT TACCAGAGCT CAACGAGCTC 
TCACTTTCTT TACGCACACT TGTTGGAACG AAATATATTC ATAGAGAAGA 
AGAATCTCGA AACTCTTGAA TCTAAAACAA CTCGGAGACT CTGTTTTCCC 
TTTCCGGAGA TCAGATCGGA TCAAGATGCA GACAACCAAC GGCTCAGATT 
CGACGTTGGC AACTTCCGGA GCCACACCGC CGAATCAACA AACCCCTCCT 
CCACCTCAGC AGTGGCAGCA GCAGCAACAG CAACAGCAAC AGTGGATGGC 
TGCCATGCAA TATCCACCAG CGGCGGCGAT GATGATGATG CAGCAGCAAC 
AGATGCTGAT GTATCCTCAT CAATATGTTC CGTATAATCA AGGTCCTTAT 
CAGCAGCATC ATCCTCAGCT TCACCAATAC GGGTCTTATC AACAGCACCA 
GCACCAGCAA CACAAGGCTA TTGACCGTGG ATCTGGAGAT GATGTCAAGA 
CTCTTTGGGT TGGTGATCTT CTTCATTGGA TGGATGAGAC TTATCTCCAT 
TCTTGCTTTT CTCACACCGG CGAGGTTTCT TCTGTGAAAG TTATACGTAA 
CAAGCTCACT TCTCAATCAG AAGGGTATGG GTTTGTTGAG TTTCTTTCAC 
GTGCTGCAGC TGAAGAAGTT CTTCAGAACT ATAGTGGTTC AGTGATGCCA 
AACTCGGACC AACCCTTCCG TATAAACTGG GCATCTTTTA GTACTGGTGA 
AAAAAGAGCA GTGGAAAATG GTCCAGACCT ATCTGTTTTT GTGGGAGACT 
TGTCTCCAGA TGTCACTGAC GTTTTATTGC ATGAGACCTT TTCTGATAGA 
TATCCTTCTG TCAAAAGCGC CAAAGTTGTG ATTGATTCCA ACACCGGCCG 
GTCCAAAGGT TATGGTTTTG TGAGGTTCGG TGATGAAAAT GAGAGGTCAA 
GGGCTTTGAC AGAAATGAAT GGAGCTTACT GTTCGAACAG GCAAATGCGT 
GTAGGTATTG CAACTCCCAA AAGAGCGATT GCTAATCAGC AACAACATTC 
TTCACAAGCT GTGATTCTGG CTGGTGGACA TGGATCAAAT GGTTCCATGG 
GTTATGGCTC GCAGTCTGAT GGCGAATCAA CTAACGCAAC AATATTTGTT 
GGCGGCATTG ACCCTGATGT TATTGATGAA GACCTCAGAC AACCTTTTTC 
CCAGTTTGGA GAGGTTGTTT CAGTGAAGAT CCCAGTAGGG AAAGGATGTG 
GATTTGTCCA ATTTGCTGAC AGGAAGAGTG CTGAAGATGC TATCGAGAGT 
TTGAACGGGA CAGTCATCGG CAAGAACACT GTCAGACTCT CCTGGGGACG 
AAGCCCAAAC AAGCAGTGGA GAGGAGACTC AGGGCAGCAG TGGAATGGAG 
GATACTCACG AGGACATGGT TACAACAATG GAGGAGGATA TGCTAACCAC 
CACGACTCCA ACAACTATCA TGGGGAGAAT TGAAGAGACT CATCAAGTGA 
TCATCTTCAT CATGGTTTCA CATATCAAAG CTAAAACCTG TAGTCGAAAG 
AAGAATTTTG TTAGATGGAT TTGATTTTGA TAGACTTGTT GTTTGGAGGA 
GATTCAAAAA TTTTGGTTAC TGGTTTGTCT CAGACTAATA TAAATGGTTG 
CAACTTGTTG GATCAAAAAA AAAA

Gene models with high sequence identity

  1. AT3G19130.1 [+] show detail - RNA-binding protein 47B
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMSmart RNA recognition motif, RNP-1 0.0000000000003
HMMSmart RNA recognition motif, RNP-1 3.6e-19
HMMSmart RNA recognition motif, RNP-1 4.9e-22
HMMPfam RNA recognition motif, RNP-1 0.000000000042
HMMPfam RNA recognition motif, RNP-1 3.1e-17
HMMPfam RNA recognition motif, RNP-1 2e-18
HMMPanther NUCLEAR ACID BINDING PROTEIN 1.3e-178
HMMPanther RNA-BINDING PROTEIN 1.3e-178
ProfileScan RNA recognition motif, RNP-1 14.726
ProfileScan RNA recognition motif, RNP-1 17.285
ProfileScan RNA recognition motif, RNP-1 18.103
superfamily RNA-binding domain, RBD 9.6e-27
superfamily RNA-binding domain, RBD 3.2e-20
superfamily RNA-binding domain, RBD 3.8e-19
Gene3D Nucleotide-binding, alpha-beta plait 4.6e-16
Gene3D Nucleotide-binding, alpha-beta plait 3.3e-21
Gene3D Nucleotide-binding, alpha-beta plait 1.7e-23

See the detailed result >

AT3G19130.1

Model type
Protein coding
Short Description
RNA-binding protein 47B
Computational Description
RNA-binding protein 47B (RBP47B); FUNCTIONS IN: RNA binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding protein 47A (TAIR:AT1G49600.1); Has 37628 Blast hits to 21966 proteins in 866 species: Archae - 14; Bacteria - 2376; Metazoa - 18486; Fungi - 4600; Plants - 6856; Viruses - 8; Other Eukaryotes - 5288 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-70-F02 introduced

  • F21705 - stem::desaturated green / cauline leaf::desaturated green / stem::present in greater numbers in organism / stem::abnormal / stem::abnormal / rosette leaf::desaturated green / stem::desaturated green / cauline leaf::desaturated green / stem::abnormal
  • F22051 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

2 mutant lines found