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  3. RAFL06-70-G15

RAFL06-70-G15

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03345)

full reading [+] show sequence

Nucleotide sequence: RAFL06-70-G15 - full reading 
ATCCAAAACA TAATTAGTAT AACGATACTA CTACTAACCG ACTGGACTAG 
ATTATTCTAC TTGATATATC CTCTCGAGAA CTATTGCTGC CGCTACTCGT 
TTCATATCTC CGTCTCCGGC TCGATCCGCC AAGTAGAGTA AGCAGCAATG 
ACTAAAAAGA AGAATCCTAA TGTTTTCTTG GATGTATCAA TTGGTGGGGA 
TCCCGTTCAA CGGATTGTCA TTGAGCTTTT TGCTGATGTT GTCCCCAAGA 
CAGCGGAAAA CTTCCGTGCC CTCTGCACAG GTGAGGCGGG CGTTGGAAAG 
TCCACTGGGA AGCCTCTACA TTTCAAAGGA TCATCTTTCC ATCGGGTTAT 
CAAAGGATTC ATGGCTCAGG GTGGTGATTT TTCCAATGGG AATGGCACTG 
GTGGGGAGAG CATCTATGGT GGGAAGTTTT CAGATGAGAA CTTTAGATTG 
GACCATGATG GAGCTGGAGT CCTTTCAATG GCAAATTGTG GCCCAAATAC 
CAACGGGTCC CAATTTTTTA TACTTTTTAA ACGCCAACCA CATCTTGATG 
GGAAGCATGT TGTATTTGGC AAAGTCGTTG AAGGGATGGC AGTAATCAAG 
AAAATGGAAC TTGTGGGGAC GAGTGATGGG AAACCTACTA GCCCAGTCAA 
AATAATAGAC TGTGGTGAAA CGTCTCAGAT AAGAGCACAT GATGCTGCTG 
AAAGAGAAAA AGGGAAATCG AAAAAATCAA ACAAGAACTT TTCTCCTGGT 
GACGTATCTG ACCGTGAAGC TAAGGAGACA CGCAAAAAAG AATCTAACGA 
GAAAAGGATA AAACGAAAAA GAAGATACTC TTCGTCAGAT TCATATAGCT 
CAAGTTCCGA CTCAGATTCA GATTCGGAAT CAGAAGCATA TTCATCTTCC 
TCCTATGAGT CTAGTTCTTC CAGTGATGGG AAGCATAGGA AGAGGAAGTC 
AACAACAAGA CACAAAGGCC GACGCGGGGA AAGAAAGAGT AAAGGACGAA 
GCGGGAAAAA GAAAGCTCGG CCAGATAGAA AACCAAGCAC GAATAGTTCA 
AGTGACACGG AGAGTAGCAG CAGTTCTGAT GATGAGAAAG TGGGCCACAA 
AGCCATAAAG TCAGTGAAAG TTGATAACGC TGATCAACAC GCCAACTTGG 
ATGACTCAGT GAAATCAAGG AGCAGGAGCC CAATTCGTAG GAGAAACCAA 
AACAGCAGGA GCAAAAGTCC TAGTAGGAGC CCTGTGAGAG TTCTTGGAAA 
TGGAAACAGA AGTCCTAGTA GGAGCCCTGT GAGAGATCTT GGAAATGGAA 
GCAGAAGTCC TCGTGAGAAG CCAACAGAGG AAACTGTGGG GAAATCTTTC 
AGAAGCCCAT CTCCAAGTGG TGTGCCCAAG CGCATCCGAA AGGGGCGTGG 
GTTCACCGAA CGCTATTCCT TTGCTCGGAA GTACCATACT CCTTCTCCTG 
AGCGTTCTCC TCCTAGACAT TGGCCTGACA GAAGAAACTT TCAGGATAGG 
AACAGGGATA GGTATCCGAG CAACAGAAGT TACTCTGAGC GCTCACCGAG 
GGGACGCTTT AGAAGCCCAC CCAGAAGAAG GAGCCCTCCA AGGTACAACC 
GGAGGAGAAG GAGCACTTCT CGGAGTCCAG ATGGGTACCG TAGACGATTG 
AGAGACGGAA GCAGGAGCCA GAGTCCGAGG CATCGTAGCC GTAGCCAGAG 
CCCTAGAAAG AGGCAGCCAA TTAGCCAAGA CCTGAAATCC CGTCTCGGGC 
CACAGAGATC CCCCATCAGA GGAGGACGCA CCTCTCCTGC AGAATCACTC 
AGCCCCTTCT CACTCACCTT CTCCACCAGG AAAGAGAGGT CTGGTTAGCT 
ATGCGGATTG ATGGTCACTC TCATCCATTG GTTTCTCTGC TGACTTGCGA 
GTTTTTGTTT TAATTTCCGT GTTTTAGTGC AAGCAATAAT AGGTAATGAT 
ATTTTTTATG TTGGTCGGAT ATATAATACT CTACCTTAGT TGCATTATTA 
CAGATCGTGG AACATTGATC AAATTGAGAC TGATATATGT TGGCAGAATT 
GAGTTTGGGA ATCGAAGTTT GTAGAAAATT TATTGAAAAA AAAAAAAAAA 
A

Gene models with high sequence identity

  1. AT3G63400.1 [+] show detail - Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
    E-value: 0; Score: 99.95

 

InterPro Scan Digest

Program Description E-value
ProfileScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 43.541
Gene3D Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 5.1e-65
FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 7.6e-35
FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 7.6e-35
FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 7.6e-35
FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 7.6e-35
FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 7.6e-35
HMMPfam Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 7.2e-47
HMMPanther CYCLOPHILIN 2.5e-171
HMMPanther CYCLOPHILIN 2.5e-171
PatternScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site 0
superfamily Cyclophilin-like 1.6e-72

See the detailed result >

AT3G63400.1

Model type
Protein coding
Short Description
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
Computational Description
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding, RNA splicing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT2G21130.1); Has 55912 Blast hits to 37431 proteins in 3034 species: Archae - 126; Bacteria - 11048; Metazoa - 23197; Fungi - 5408; Plants - 3603; Viruses - 370; Other Eukaryotes - 12160 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-70-G15 introduced

  • F14335 - Specific phenotypes were NOT observed.
  • F24926 - Specific phenotypes were NOT observed.
  • F29535 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found