1. Home
  2. Full-length cDNAs
  3. RAFL06-70-L01

RAFL06-70-L01

RIKEN Arabidopsis Full-length cDNAs

Resource: (pdz87633)

3 prime EST [+] show sequence

Nucleotide sequence: RAFL06-70-L01 - 3 prime EST 
TGGTGGAATC AATCACTATT ATTAATCCGA TATTATAAGT TTTGTAGTCT 
AGATATCCAA AGAGAATAAT TTCAATTTTT TTAAAAGATC ATACGAAACT 
TTAAATTAGA GAGAAAAAAA AGAGAATTGA AAATTGATTA CCTATATTGG 
AAATTTTTTA TATGATAAAT TTATCAAGTG AACGACTGAT TAGGAGTCGA 
AGAGTTTGCA ACATCCTTCT TGACAACAAC GACCTCGTTT TTAGTCTTCC 
TCCTTTTCTT CTTCCTGTAC GGAATCCCAC GAGCCTTGGA TTGAGATTCT 
CTCACTTCCC TCAAGTGAAC CCGGATCGAC CCGTTTGCAA ACGGGTTAGT 
ATCAGGTGAC CCGCCACCGT GTTCCTCGTA AGCAGCTCTT AGCCGTCCGA 
TCAAAGCATC TAGGCTTCCC AAGCTTGT

Gene models with high sequence identity

  1. AT4G18610.1 [+] show detail - Protein of unknown function (DUF640)
    E-value: 0; Score: 99.53

AT4G18610.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF640)
Computational Description
LIGHT SENSITIVE HYPOCOTYLS 9 (LSH9); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 (InterPro:IPR006936); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF640) (TAIR:AT1G07090.1); Has 307 Blast hits to 307 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 0; Plants - 293; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-70-L01 introduced

  • F12533 - seed::increased size / seed::increased length / seed::decreased width

Mutant lines with disrupted or induced

1 mutant line founds