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RAFL06-71-A01

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07653)

full reading [+] show sequence

Nucleotide sequence: RAFL06-71-A01 - full reading 
GGGTTTCTCA TCTACGACGG CGTGGTGTTC CTCCTTCCTG CTCTGAAAAA 
TGGCGAAGAG AACGAAGAAG GTTGGAATCG TCGGCAAATA CGGAACACGT 
TATGGTGCGA GTATCAGGAA GCAGATTAAG AAGATGGAGG TCAGCCAGCA 
CAGCAAGTAC TTCTGTGAGT TCTGTGGCAA GTACGGAGTG AAGCGAAAGG 
CTGTTGGTAT CTGGGGTTGC AAGGATTGTG GCAAGGTCAA GGCAGGTGGT 
GCTTACACAA TGAACACCGC CAGTGCGGTC ACTGTTAGAA GCACGATCAG 
AAGGTTGAGG GAGCAGATCG AGGGTTAAAA GTCTGCTGGC TTTTTATATT 
TGGTTTCCTT GTTTTGACAA TTTAAGTTTT GCAAACTCTA TGCTTGTGAT 
TTTGAATCAA GACTTATACA TTGAGCAGTT TAAGCAGGTT TTTATGAAAA 
AAAAAAAAAA AA

Gene models with high sequence identity

  1. AT3G60245.1 [+] show detail - Zinc-binding ribosomal protein family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMTigr Ribosomal protein L37ae 1.4e-42
superfamily Ribosomal protein, zinc-binding domain 9.1e-32
HMMPfam Ribosomal protein L37ae 8.6e-39
Gene3D Ribosomal protein L37ae/L37e, N-terminal domain 9.1e-28
HMMPanther 60S RIBOSOMAL PROTEIN L37A 1.4e-60
HMMPanther Ribosomal protein L37ae 1.4e-60

See the detailed result >

AT3G60245.1

Model type
Protein coding
Short Description
Zinc-binding ribosomal protein family protein
Computational Description
Zinc-binding ribosomal protein family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein, zinc-binding domain (InterPro:IPR011332), Ribosomal protein L37ae (InterPro:IPR002674), Ribosomal protein L37ae/L37e, N-terminal domain (InterPro:IPR011331); BEST Arabidopsis thaliana protein match is: Zinc-binding ribosomal protein family protein (TAIR:AT3G10950.1); Has 1052 Blast hits to 1052 proteins in 365 species: Archae - 290; Bacteria - 0; Metazoa - 325; Fungi - 120; Plants - 130; Viruses - 0; Other Eukaryotes - 187 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-71-A01 introduced

  • F01014 - Specific phenotypes were NOT observed.
  • F07750 - seed::increased size / seed::increased length
  • F09136 - Specific phenotypes were NOT observed.
  • F19848 - seed::increased size / seed::increased length
  • F29020 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found