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  3. RAFL06-71-B03

RAFL06-71-B03

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03353)

full reading [+] show sequence

Nucleotide sequence: RAFL06-71-B03 - full reading 
ACTTAGGGTT CATAGCAGCC AGAGAGAGAG ACAAGTGAGA GGGATCTACC 
AAACGAAGCA ACAATGGTGA AGTTCTTGAA GCAGAACAAG GCCGTGATCC 
TTCTTCAAGG ACGTTACGCC GGAAAGAAAG CCGTCATCAT CAAATCCTTC 
GACGACGGTA ACCGTGATCG TCCTTACGGA CACTGCCTCG TCGCCGGACT 
CAAGAAGTAC CCGAGCAAAG TCATCCGCAA AGACTCAGCT AAGAAGACAG 
CTAAGAAATC TAGGGTTAAG TGTTTCATCA AGCTTGTTAA TTACCAGCAT 
CTGATGCCTA CTCGTTACAC ACTCGACGTG GATCTCAAGG AAGTGGCGAC 
TCTTGATGCT CTTCAGAGTA AGGATAAGAA GGTTGCTGCT CTTAAGGAAG 
CTAAGGCTAA GCTTGAGGAG AGGTTCAAAA CCGGTAAGAA CAGATGGTTC 
TTTACCAAGC TCAGGTTCTG AAGAAATTTT CTATTTCGTG AGGAATTCAT 
TTTGAGCGTT TTGTTATCGT GTTTTTTAGT TTCTAGGGTT CATTTCCCAT 
GGTGAAAAAT GTGGATCCTG TTTTGGATTG TGGAAGATGT TTTGTTGAAG 
TTTGGATTAT GGATTTGATC TTTCAAAAAA AAAAAAAAAA

Gene models with high sequence identity

  1. AT4G15000.1 [+] show detail - Ribosomal L27e protein family
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther Ribosomal protein L27e 2.1e-79
PatternScan Ribosomal protein L27e, conserved site 0
HMMPfam Ribosomal protein L27e 9e-33
Coil coiled-coil 0
BlastProDom Ribosomal protein L27e 5e-27

See the detailed result >

AT4G15000.1

Model type
Protein coding
Short Description
Ribosomal L27e protein family
Computational Description
Ribosomal L27e protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, ribosome, cytosolic large ribosomal subunit, intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L27e, conserved site (InterPro:IPR018262), Ribosomal protein L27e (InterPro:IPR001141); BEST Arabidopsis thaliana protein match is: Ribosomal L27e protein family (TAIR:AT3G22230.1); Has 764 Blast hits to 764 proteins in 292 species: Archae - 0; Bacteria - 0; Metazoa - 341; Fungi - 149; Plants - 139; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-71-B03 introduced

  • F11635 - seed::increased size

Mutant lines with disrupted or induced

3 mutant lines found