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RAFL06-71-K24

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03372)

full reading [+] show sequence

Nucleotide sequence: RAFL06-71-K24 - full reading 
GCCTACTGCC TAGCCATTAC CCTCTCTCTC TCTTTATAAT AAATAACATC 
ACACATCACT TACATTCACT CTTCACAAAG ATATTATAGA GTGTGAGAGA 
GAGACACTCT TGTTTCATCT TCAACTTCCA CTACCTTTGC AAGATTCTAC 
CTGAGATAGA TGGCGAAGTT CCGACAAATG GGTTCATCAA TCTTCTTCCT 
CTTTCTTATC ATAATCTCAT TATGTTCCGC CCACAAAGAA GCGTTTTCTT 
CAACTGATCT TGTTCAAATG GAGTGCTTGA GAGTCCCACC GTTAGAGTTT 
GCTGAAGCGG CCAAAACCGT CGTCGACGCT ATAACAAAAG CGGTAGCTAT 
AGTGTCCAAG TTCGACAAGA AAGCCGGGAA GTCGCGAGTC TCCAATGCGA 
TTGTTGATTG TGTTGATCTT CTTGATTCTG CCGCCGAAGA GCTTTCTTGG 
ATCATCTCTG CCTCTCAATC CCCCAACGGT AAAGACAATA GCACAGGAGA 
CGTGGGTTCG GATCTAAGGA CATGGATAAG CGCCGCACTT TCTAACCAGG 
ACACATGTCT TGACGGTTTC GAGGGTACTA ATGGAATTAT CAAAAAGATA 
GTGGCCGGTG GTCTTAGCAA GGTTGGTACG ACCGTTCGGA ATTTACTAAC 
GATGGTTCAC TCTCCTCCCT CTAAGCCCAA ACCTAAGCCC ATTAAGGCCC 
AGACAATGAC GAAAGCTCAT AGTGGCTTCA GTAAGTTCCC CTCATGGGTT 
AAACCCGGTG ATCGGAAGTT GTTGCAAACT GATAACATAA CGGTTGCTGA 
CGCGGTTGTA GCCGCAGACG GGACCGGAAA TTTCACGACG ATAAGTGACG 
CGGTGTTGGC TGCACCGGAC TATAGTACCA AAAGATATGT CATACATGTA 
AAAAGAGGTG TGTATGTAGA GAATGTGGAG ATTAAAAAGA AGAAATGGAA 
CATTATGATG GTTGGTGACG GCATCGATGC CACCGTGATC ACGGGTAACC 
GGAGTTTCAT CGACGGCTGG ACTACTTTCC GATCTGCTAC ATTTGGTAAG 
TCCAAATTTA TAATATCTTT CACCTAGTAT TTTTTGTTTT CTTACTATTA 
ATGAAGATTA TGAATTGGTT ATAAAACTAA AAAAAAAAAA AAAA

Gene models with high sequence identity

  1. AT3G43270.1 [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMSmart Pectinesterase inhibitor 1.89999859865865e-20
PatternScan Pectinesterase, active site 0
HMMPfam Pectinesterase, catalytic 6.79999999999998e-29
HMMTigr Pectinesterase inhibitor 0.799999996793849
HMMPfam Pectinesterase inhibitor 4.80000000000001e-19
superfamily Pectin lyase fold/virulence factor 1.2e-27
Gene3D Pectin lyase fold 1.50000306971087e-23
superfamily Pectinesterase inhibitor 0.000000011

See the detailed result >

AT3G43270.1

Model type
Protein coding
Short Description
Plant invertase/pectin methylesterase inhibitor superfamily
Computational Description
Plant invertase/pectin methylesterase inhibitor superfamily; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: plant-type cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectin methylesterase 44 (TAIR:AT4G33220.1); Has 2924 Blast hits to 2864 proteins in 331 species: Archae - 6; Bacteria - 617; Metazoa - 1; Fungi - 199; Plants - 2076; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-71-K24 introduced

  • F08048 - Specific phenotypes were NOT observed.
  • F08619 - rosette leaf::decreased size / stem::decreased thickness / cauline leaf::abnormal / whole plant::decreased height / cauline leaf::decreased width / stem::abnormal / stem internode::decreased length
  • F15944 - Specific phenotypes were NOT observed.
  • F20940 - Specific phenotypes were NOT observed.
  • F22037 - Specific phenotypes were NOT observed.
  • F24146 - Specific phenotypes were NOT observed.
  • F28822 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

9 mutant lines found