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RAFL06-71-L14

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03374)

full reading [+] show sequence

Nucleotide sequence: RAFL06-71-L14 - full reading
GAGTGTTTTT ATAAAACCAT TTTTCCATCT TCCTCATCAC CTTCCCAAGA 
AGAAGAACAC CAAAGAAGAA GAAAGGTTAA TAATGATGGG CAGTGTCGAG
CTGAATCTGA GGGAGACTGA GCTGTGTCTT GGTCTTCCCG GTGGAGATAC
AGTGGCTCCG GTAACCGGAA ACAAGAGAGG GTTCTCAGAG ACGGTTGATC
TGAAGCTAAA TCTGAATAAT GAGCCTGCAA ACAAGGAAGG ATCTACGACT
CATGACGTCG TGACTTTTGA TTCCAAGGAG AAGAGTGCTT GTCCTAAAGA
TCCAGCCAAA CCTCCGGCCA AGGCACAAGT TGTGGGATGG CCACCGGTGA
GATCATACCG GAAGAACGTG ATGGTTTCCT GCCAAAAATC AAGCGGTGGC
CCGGAGGCGG CGGCGTTCGT GAAGGTATCA ATGGACGGAG CACCGTACTT
GAGGAAAATC GATTTGAGGA TGTATAAAAG CTACGATGAG CTTTCTAATG
CTTTGTCCAA CATGTTCAGC TCTTTTACCA TGGGCAAACA TGGAGGAGAA
GAAGGAATGA TAGACTTCAT GAATGAGAGG AAATTGATGG ATTTGGTGAA
TAGCTGGGAC TATGTTCCCT CTTATGAAGA CAAAGACGGT GATTGGATGC
TCGTCGGCGA CGTTCCTTGG CCAATGTTCG TCGATACATG CAAGCGTTTA
CGTCTCATGA AAGGATCGGA TGCCATTGGT CTCGCTCCGA GGGCGATGGA
GAAGTGCAAG AGCAGAGCTT GAAGTCAAAT TAAAAGGATA AGTGGTATCG
ATTATATATT TGATTAACAC ATTGATTGGT GTTAATTGCT CTTTTTTTTC
TTACGATGAA ATACATTGTT CAGTTTCTTT TGATTGTCTG TGTTTTGATC
TGGATTTGGT ATGTAGATAT AGTTTGTATG CTATTATGTG TAATGAACTT
AAGTTAAATA TTTGAGACAT TTGTAATGGA AAATGTGTAA TAATTTGAAC
ATCCTAAAAA AAAAAATAAA AAAAAAAAAA AAA

Gene models with high sequence identity

  1. AT1G04250.1 [+] show detail - AUX/IAA transcriptional regulator family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
ProfileScan Aux/IAA-ARF-dimerisation 29.572
superfamily CAD & PB1 domains 0.000000025
HMMPfam AUX_IAA 1.8e-85

See the detailed result >

AT1G04250.1

Model type
Protein coding
Short Description
AUX/IAA transcriptional regulator family protein
Curator Summary
Transcription regulator acting as repressor of auxin-inducible gene expression. Auxin-inducible AUX/IAA gene. Short-lived nuclear protein with four conserved domains. Domain III has homology to beta alpha alpha dimerization and DNA binding domains. Involved in auxin signaling. Auxin induces the degradation of the protein in a dosage-dependent manner in a process mediated by AtRac1. Auxin induced the relocalization of the protein within the nucleus from a diffused nucleoplasmic pattern to a discrete particulated pattern named nuclear protein bodies or NPB in a process also mediated by Rac1. Colocalizes with SCF, CSN and 26S proteasome components.
Computational Description
AUXIN RESISTANT 3 (AXR3); CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: indole-3-acetic acid inducible 14 (TAIR:AT4G14550.1); Has 1763 Blast hits to 1762 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1762; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-71-L14 introduced

  • F19033 - rosette leaf::decreased size / stem::abnormal

Mutant lines with disrupted or induced

6 mutant lines found