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RAFL06-72-D22

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03389)

full reading [+] show sequence

Nucleotide sequence: RAFL06-72-D22 - full reading 
AGTAATAATC AAGTCAGAGC CGGCGAAGCT TGCCGTTTCC GCCGTTGGAG 
GAGAGTTTTT ACTGTTGCTG TCCTGTTGAC ATTTTGAGAC ATGAAATGAT 
CTTGGGTTGA TGTTTGTATG GTAGCAGAGG AATAGTAGTC ATGAAGCTTA 
TTTCACTTGT TAGAAACGTT CGTTCTCGCC AATGTCAACC GGAAGTAATC 
TGGTCTGTGC AAGTTCGTTT CTTGCAGCAA GACTCTGTCT CGAAAGCTAA 
ACCCAAGAAA TACAAATACC CGTCAGTTTA TGATCCGTAT GGTCCTAGAC 
CCCAGCCTTC AAGCAAAATC ATGGAGCTAG CTGAGCGTAT AGCTGCTTTA 
TCTCCAGAAG AAAGAAAACA GATTGGTCCT GCACTCAATG AACACCTGAG 
GCTTCCAAAA CAACAGATGA TTTCATCGGA CGGCATTGGA GCAAAACAAG 
ATACCGGAGC TGGGAATGTA GAGGAGAAGA AGGAGAAGAC GGCTTTCGAT 
GTGAAGTTGG AGAAGTTTAA TGCATCTGAT AAGATCAAAG TGATAAAAGA 
AGTGAGAACG TTCACAAGTT TGGGTCTGAA GGAAGCGAAA GAGCTTGTGG 
AGAAAGTCCC GGCTATTCTT AAACAAGGTG TGACAAAGGA AGAAGCTAAT 
GAAATCATAG CCAAGATCAA AGCTGTTGGT GGAATCGCAG TTATGGAGTA 
GGTGACTTTT GACACTTCGA TTGTTTTTTT GTTTGATTCA CTATTTGGTA 
TTGTGATCAC ATCTTGGTAC TTAAGGTAGA TGTTTTGTAA TAACAAATCG 
ATTACTTGAC ATTGAGTTTC AAAAAAAAAA AAAAAA

Gene models with high sequence identity

  1. AT3G06040.1 [+] show detail - Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Ribosomal protein L7/L12, C-terminal 8.3e-22
Gene3D Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like 2.9e-19
BlastProDom Ribosomal protein L7/L12, C-terminal 2e-21
HMMPanther Ribosomal protein L12, chloroplast 2e-95
HMMPanther RIBOSOMAL PROTEIN L7/L12 2e-95
superfamily Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like 5.1e-21

See the detailed result >

AT3G06040.1

Model type
Protein coding
Short Description
Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein
Computational Description
Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, large ribosomal subunit; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L12, chloroplast (InterPro:IPR015608), Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (InterPro:IPR014719), Ribosomal protein L7/L12, C-terminal (InterPro:IPR013823); BEST Arabidopsis thaliana protein match is: Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (TAIR:AT1G70190.2); Has 8332 Blast hits to 8332 proteins in 2728 species: Archae - 0; Bacteria - 5601; Metazoa - 194; Fungi - 132; Plants - 253; Viruses - 0; Other Eukaryotes - 2152 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-72-D22 introduced

  • F10251 - Specific phenotypes were NOT observed.
  • F13232 - Specific phenotypes were NOT observed.
  • F13549 - Specific phenotypes were NOT observed.
  • F13708 - Specific phenotypes were NOT observed.
  • F27301 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

6 mutant lines found