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  3. RAFL06-72-E07

RAFL06-72-E07

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17227)

full reading [+] show sequence

Nucleotide sequence: RAFL06-72-E07 - full reading 
CCCCCCGAGA TTCCAGGTCA AACTGTGATC CATTATCTTT GCTACTAAAC 
TAAGTTCTTT TCTCTGATCG AATCAAAAAG TTTTCAACTT TCTAAATTTT 
TTTAGTTCTA AGGAAAAAAC CTCTCCGAGA ATGGTTTTAT CGGTGAAGCA 
AACACTCTCT CCGAAAATCG GACTTTTCCG ACGAAACCCT TCATCCTCAC 
TAGGAAGATC TCCTGTTTCT CTCTCGTTTC CATCGACGGA GCTTCCAAAA 
CGCACCGTTT TAGCCGTGTC AAAGCCGCTT CATCTCTCTT CTTCTCTGAG 
AGCTAAGTCT CCGGTAGTGA GATGTGAAGC TTATGAAGCT GACCGATCAG 
AGCCTCATCC GATCGGTGAT GATGCTGCGG CGGCGGAAAC GAAATCAGAG 
GCGGCTAAGA AATTGAAGAT CGGGATTTAC TTTGCTACTT GGTGGGCTTT 
GAACGTTGTG TTCAATATCT ACAACAAGAA GGTCTTGAAC GCTTATCCTT 
ACCCATGGCT TACCTCGACG CTTTCTCTTG CCGCTGGTTC GTTGATGATG 
CTTATCTCTT GGGCTGTTGG GATCGTTGAG ACTCCCAAGA CGGATTTTGA 
TTTCTGGAAA ACTCTTTTTC CGGTTGCTGT GGCACACACA ATTGGTCATG 
TGGCTGCAAC GGTGAGTATG TCAAAGGTTG CTGTTTCTTT CACTCACATC 
ATCAAGAGTG GTGAACCTGC GTTTAGTGTG CTTGTCTCGA GGTTTATTTT 
GGGTGAAACC TTCCCTACTT CGGTTTACTT GTCTCTCATT CCAATCATTG 
GTGGTTGCGC TCTGTCTGCC CTTACCGAGC TTAACTTCAA CATGATTGGT 
TTCATGGGAG CTATGATTTC GAACTTGGCT TTCGTGTTCC GTAACATCTT 
CTCGAAGAAG GGAATGAAGG GAAAGTCTGT GAGCGGGATG AACTACTACG 
CCTGTCTCTC AATGCTGTCC CTATTGATCC TCACTCCCTT TGCCATTGCT 
GTTGAAGGAC CTCAGATGTG GGTCGATGGC TGGCAGACAG CGCTCGCTAC 
TGTCGGACCA CAGTTTGTCT GGTGGGTGGT TGCGCAGAGT GTGTTCTATC 
ACCTCTACAA CCAAGTGTCT TACATGTCTT TAGACCAAAT CTCTCCCTTG 
ACGTTTAGTG TTGGTAACAC CATGAAACGT ATCTCCGTCA TTGTCTCCTC 
CATCATTATC TTCCGCACTC CAGTCCAGCC CGTCAATGCT CTTGGAGCAG 
CCATTGCTAT CCTTGGAACC TTCTTGTATT CCCAGGCAAA GCTCTGATGC 
GAAAGACATA AGAGTGTAAT AAGGGTCTGG TGTTGAGCTC CTGACTTCGG 
TTAAAACCGG GAAAAGAGCT TAATGTAGAT ATTTGTCCTC AATAATGAAA 
GAAATGATGA GATTGGACAC TACCATGTTT AGAGTGTGTT AGGCAGTTTT 
TTTTTTTTTA CTTTTGAGTT TTTTTGAATT TGGGGGAATG AGAAGATTGC 
CTCTTTGTAA CTAAAGTGGG AAATAGATAT TTGTCCCCTT GAGAATAAGA 
CACCCTGCAA CTCTCTTTTT AACTTGGAGA GACATATTAT AAAAAGTAGA 
GAATATTTAT CTCGGAAAAA AAAAA

Gene models with high sequence identity

  1. AT5G54800.1 [+] show detail - glucose 6-phosphate/phosphate translocator 1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Multidrug resistance efflux transporter EmrE 1.9e-06
superfamily Multidrug resistance efflux transporter EmrE 0.00016
HMMTigr Tpt phosphate/phosphoenolpyruvate translocator 1.8e-161
HMMPanther SOLUTE CARRIER FAMILY 35 2.1e-111
HMMPfam Protein of unknown function DUF250 2.9e-37

See the detailed result >

AT5G54800.1

Model type
Protein coding
Short Description
glucose 6-phosphate/phosphate translocator 1
Curator Summary
Encodes glucose6-Phosphate/phosphate transporter 1. Essential for pollen maturation and embryo sac development.
Computational Description
glucose 6-phosphate/phosphate translocator 1 (GPT1); FUNCTIONS IN: antiporter activity, glucose-6-phosphate transmembrane transporter activity; INVOLVED IN: vacuole organization, pollen maturation, embryo sac development, response to nematode, lipid particle organization; LOCATED IN: integral to membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tpt phosphate/phosphoenolpyruvate translocator (InterPro:IPR004696), Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: glucose-6-phosphate/phosphate translocator 2 (TAIR:AT1G61800.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-72-E07 introduced

  • F27016 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

2 mutant lines found