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  3. RAFL06-72-J05

RAFL06-72-J05

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17231)

full reading [+] show sequence

Nucleotide sequence: RAFL06-72-J05 - full reading 
GAGAGATAGA TTCTTATATA CTACTGAGAA TCTTCAATTT CTGCAACTTT 
TGTATCTCTT CCTGATGGAG TCTTCAAGTC CCCACCATAG TCACATTGTT 
GAGGTTAATG TTGGAAAATC TGATGAAGAG AGAATAATTG TGGCGAGTAA 
AGTCTGTGGA GAAGCACCAT GTGGGTTTTC AGATTCTAAG AATGCTTCCG 
GGGATGCTCA CGAACGCTCT GCTTCTATGC GGAAGCTTTG TATCGCCGTC 
GTGCTGTGTC TAGTGTTCAT GAGTGTTGAA GTTGTTGGTG GGATTAAAGC 
CAATAGTTTA GCTATATTAA CCGATGCAGC TCATTTGCTC TCTGACGTTG 
CTGCCTTTGC TATCTCCCTC TTCTCATTGT GGGCTGCTGG CTGGGAAGCG 
ACTCCTAGGC AGACTTACGG GTTCTTCAGG ATTGAGATTT TGGGTGCTCT 
TGTATCTATC CAGCTCATTT GGTTGCTCAC GGGTATTCTG GTTTATGAAG 
CGATTATCAG AATTGTTACA GAGACCAGTG AGGTTAATGG ATTCCTCATG 
TTTCTGGTTG CTGCCTTTGG TCTAGTGGTG AACATCATAA TGGCTGTTCT 
GCTAGGGCAT GATCATGGTC ACAGTCATGG ACATGGGCAT GGCCACGGCC 
ATGACCATCA CAATCATAGC CATGGGGTGA CTGTTACCAC TCATCACCAT 
CATCACGATC ATGAACATGG CCATAGTCAT GGTCATGGAG AGGACAAGCA 
TCATGCTCAT GGGGATGTTA CTGAGCAATT GTTGGACAAA TCGAAGACTC 
AAGTCGCAGC AAAAGAGAAA AGAAAGAGAA ACATCAATCT CCAAGGAGCT 
TATCTGCATG TCCTTGGGGA TTCCATCCAG AGTGTTGGTG TTATGATTGG 
AGGAGCTATC ATTTGGTACA ATCCGGAATG GAAGATAGTG GATCTGATCT 
GCACACTTGC CTTTTCGGTT ATTGTCCTAG GAACAACCAT CAACATGATT 
CGCAACATTC TAGAAGTATT GATGGAGAGT ACACCCAGAG AGATTGACGC 
CACAAAGCTC GAAAAGGGTT TGCTCGAAAT GGAAGAAGTG GTGGCTGTTC 
ATGAGCTCCA CATATGGGCT ATCACAGTGG GAAAAGTGCT ATTGGCTTGC 
CATGTCAATA TCAGACCAGA AGCAGATGCA GATATGGTGC TCAACAAGGT 
AATTGATTAC ATCCGCAGGG AGTACAACAT TAGTCATGTC ACGATACAAA 
TCGAGCGCTA AAAGCTAAGT AAGATCTGAT GAAGGGTTTT TGTATCAGCA 
TTCTCATTAA CAATAAAATC AATAAAGTTT CTACATTTTT CAAAAAAAAA 
A

Gene models with high sequence identity

  1. AT2G46800.1 [+] show detail - zinc transporter of Arabidopsis thaliana
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Coil coiled-coil 0
HMMPanther Cation efflux protein 1e-106
HMMPfam Cation efflux protein 6.9e-63
HMMTigr Cation efflux protein 5.5e-85

See the detailed result >

AT2G46800.1

Model type
Protein coding
Short Description
zinc transporter of Arabidopsis thaliana
Curator Summary
Encodes a member of the zinc transporter (ZAT) and cation diffusion facilitator (CDF) families. It is expressed throughout the plant, especially in dividing, differentiating and expanding cells. The protein is localized to the vacuolar membrane. Mediates Zn ion homeostasis.
Computational Description
zinc transporter of Arabidopsis thaliana (ZAT); FUNCTIONS IN: zinc ion transmembrane transporter activity, inorganic anion transmembrane transporter activity, metal ion transmembrane transporter activity; INVOLVED IN: cellular zinc ion homeostasis, zinc ion transport, response to metal ion; LOCATED IN: vacuolar membrane, plasma membrane, vacuole; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cation efflux protein (InterPro:IPR002524); BEST Arabidopsis thaliana protein match is: metal tolerance protein A2 (TAIR:AT3G58810.1); Has 17776 Blast hits to 10611 proteins in 2227 species: Archae - 165; Bacteria - 10659; Metazoa - 2900; Fungi - 835; Plants - 528; Viruses - 26; Other Eukaryotes - 2663 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-72-J05 introduced

  • F18223 - seed::increased size / seed::increased length
  • F27203 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

9 mutant lines found