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RAFL06-72-J19

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03396)

full reading [+] show sequence

Nucleotide sequence: RAFL06-72-J19 - full reading 
ACATCTCTCT CTATTTCTCT TCCACAAAGA GTCCTAACTT CGAGTTGAAA 
CAAACACCAT TTCTCATCTC TATCTCAGAA AGAACAAACC ATTTCGTGTT 
CTTTCTTTCT CTATTCTCAT AAGGAAATAT AATTCCTGAA ACTGTTGAGT 
TCTTGTGAAA GGAAATAAAA AACATGATGA TGGGCAAAGA AGATCTAGGT 
TTGAGCCTAA GCTTAGGGTT TTCACAAAAT CACAATCCTC TTCAGATGAA 
TCTGAATCCT AACTCTTCAT TATCAAACAA TCTCCAGAGA CTCCCATGGA 
ACCAAACATT CGATCCTACA TCAGATCTTC GCAAGATAGA CGTGAACAGT 
TTTCCATCAA CGGTTAACTG CGAGGAAGAC ACAGGAGTTT CGTCACCAAA 
CAGTACGATC TCAAGCACCA TTAGCGGGAA GAGAAGTGAG AGAGAAGGAA 
TCTCCGGAAC CGGCGTTGGC TCCGGCGACG ATCACGACGA GATCACTCCG 
GATCGAGGGT ACTCACGTGG AACCTCAGAT GAAGAAGAAG ACGGGGGCGA 
AACGTCGAGG AAGAAGCTCA GGTTATCAAA AGATCAGTCT GCTTTTCTCG 
AAGAGACTTT CAAAGAACAC AACACTCTCA ATCCCAAACA GAAGCTAGCT 
TTGGCTAAGA AGCTGAACTT GACGGCAAGA CAAGTGGAAG TGTGGTTCCA 
AAACAGAAGA GCTAGAACCA AGTTAAAGCA AACGGAGGTA GATTGCGAAT 
ACTTGAAACG GTGCGTAGAG AAGCTAACGG AAGAGAACCG GAGACTTCAG 
AAAGAGGCTA TGGAGCTTCG AACTCTCAAG CTGTCTCCAC AATTCTACGG 
TCAGATGACT CCACCAACTA CACTCATCAT GTGTCCTTCG TGCGAGCGTG 
TGGGTGGCCC ATCATCATCG AACCATCACC ACAATCACAG GCCCGTTTCT 
ATCAATCCGT GGGTTGCTTG TGCTGGTCAG GTGGCTCATG GGCTGAATTT 
TGAAGCCTTG CGTCCACGAT CGTGATTTTT TATTTTAGTG GTGGGAAAAG 
GGTGTTTTGG TATTTTTCGT TATCGTTATA TAGTCTATCT GTGTGGGGTC 
ATTGTAATTT TGGATGATTG GCCTTCTCAT GAACTAGTCC TATGTATGAT 
GCAACCTTAA AAAGATTTAA ATTAGCAAAA ATTAGTTACA AACTT

Gene models with high sequence identity

  1. AT5G47370.1 [+] show detail - Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Homeodomain-like 9.7e-19
Coil coiled-coil 0
HMMSmart Homeobox 6.9e-16
HMMSmart Leucine zipper, homeobox-associated 1.1e-23
ProfileScan Homeobox 17.313
Gene3D Homeodomain-related 2.2e-16
HMMPanther HOMEOBOX PROTEIN 5.1e-13
PatternScan Homeobox, conserved site 0
HMMPfam HD-ZIP protein, N-terminal 1.6e-24
HMMPfam Homeobox 8.8e-16
HMMPfam Leucine zipper, homeobox-associated 2e-14

See the detailed result >

AT5G47370.1

Model type
Protein coding
Short Description
Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein
Curator Summary
homeobox-leucine zipper genes induced by auxin, but not by other phytohormones. Plays opposite roles in the shoot and root tissues in regulating auxin-mediated morphogenesis.
Computational Description
HAT2; FUNCTIONS IN: transcription repressor activity, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to auxin stimulus, auxin mediated signaling pathway, shade avoidance, regulation of transcription, DNA-dependent, unidimensional cell growth; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HD-ZIP protein, N-terminal (InterPro:IPR006712), Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein (TAIR:AT4G17460.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-72-J19 introduced

  • F14834 - Specific phenotypes were NOT observed.
  • F24434 - rosette leaf::dark green / rosette leaf::abnormal / stem::abnormal / sporophyte vegetative stage::decreased speed
  • F26341 - rosette leaf::increased size / stem::increased thickness
  • F26712 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found