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  3. RAFL06-72-K12

RAFL06-72-K12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03399)

full reading [+] show sequence

Nucleotide sequence: RAFL06-72-K12 - full reading 
ACATTCACAC ACACCCACAT TTTACATTCA ACTCTTATAC AATATGCCCA 
TGTTAATGGC GACACGTATC GATATAATCC AAAAGCTTAA TGTATATCCA 
AGGTTTCAAA ACCATGACAA GAAGAAACTA ATCACTCTCT CCAATTTGGA 
CCGTCAGTGT CCTTTACTCA TGTACTCTGT CTTCTTCTAC AAGAATACCA 
CAACTCGTGA CTTTGACTCC GTCTTCTCCA ACCTGAAGCT CGGGCTGGAG 
GAGACTATGT CTGTGTGGTA TCCCGCGGCA GGGAGACTGG GTTTGGACGG 
AGGTGGCTGC AAGCTCAACA TCCGGTGTAA CGATGGTGGC GCAGTCATGG 
TGGAGGCGGT GGCGACAGGT GTCAAGTTGT CCGAGCTTGG TGATTTGACT 
CAGTACAATG AGTTTTATGA GAATTTAGTT TACAAGCCTT CCTTGGATGG 
TGATTTCTCT GTGATGCCTC TTGTTGTTGC TCAGGTGACA AGATTTGCAT 
GTGGAGGTTA CTCAATTGGA ATCGGTACAA GCCACTCTCT ATTTGATGGA 
ATCTCAGCTT ACGAATTCAT TCACGCGTGG GCCTCCAACT CTCACATTCA 
CAACAAATCC AACAGCAAGA TTACTAATAA AAAGGAAGAT GTGGTCATCA 
AACCGGTTCA TGATCGACGA AATCTACTGG TTAACCGGGA TGCTGTCCGA 
GAAACCAATG CTGCAGCCAT TTGTCATCTG TACCAGTTGA TCAAACAGGC 
GATGATGACC TATCAGGAGC AAAACCGTAA CTTAGAGTTA CCAGACTCTG 
GTTTTGTGAT CAAAACGTTC GAGCTTAATG GCGATGCGAT AGAAAGCATG 
AAGAAGAAAT CACTAGAAGG GTTCATGTGC TCCTCCTTTG AGTTTCTTGC 
TGCTCATTTG TGGAAGGCAA GAACAAGGGC TTTAGGGTTG AGGAGAGACG 
CCATGGTGTG TTTACAATTC GCAGTGGACA TAAGGAAAAG AACGGAGACA 
CCGCTGCCAG AAGGGTTTTC CGGCAACGCA TACGTGCTTG CCTCGGTGGC 
ATCCACCGCC AGAGAATTAC TTGAAGAGCT AACACTCGAG TCAATAGTCA 
ACAAGATCAG AGAAGCCAAG AAATCAATTG ACCAAGGTTA CATAAACTCT 
TACATGGAAG CACTCGGAGG TAGTAATGAC GGAAATCTCC CTCCTCTCAA 
AGAGCTAACC CTAATCTCCG ACTGGACAAA AATGCCATTT CACAATGTTG 
GCTTTGGCAA CGGCGGCGAG CCAGCGGATT ACATGGCCCC ACTGTGTCCA 
CCGGTGCCAC AAGTTGCTTA TTTCATGAAG AACCCTAAAG ATGCCAAAGG 
TGTTCTTGTG AGGATTGGCT TGGACCCACG AGATGTTAAT GGCTTTTCAA 
ATCATTTCCT TGATTGCTAA TATATTAGCT GGTGATAATT AATTAATTAG 
TAGAATCTTT GTGGTAGTAT ACAGTATGAT AATGGCTCCT CTATATGCAT 
GCGTGTGCGC TAAAGACACT TTATTGTAAT TGGGTTATGA TGATGTATAA 
TTTAATGACA TCTCTCTGCT TTGC

Gene models with high sequence identity

  1. AT4G31910.1 [+] show detail - HXXXD-type acyl-transferase family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Transferase 1.3e-67
Gene3D no description 7.1e-39
Gene3D no description 1.1e-36

See the detailed result >

AT4G31910.1

Model type
Protein coding
Short Description
HXXXD-type acyl-transferase family protein
Computational Description
HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT5G41040.1); Has 2584 Blast hits to 2554 proteins in 136 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 40; Plants - 2539; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-72-K12 introduced

  • F09047 - rosette leaf::decreased size / cauline leaf::epinastic / whole plant::decreased height / stem internode::decreased length / rosette leaf::epinastic / rosette leaf::abnormal / cauline leaf::decreased size / stem::present in fewer numbers in organism
  • F15114 - rosette leaf::decreased length / rosette leaf::present in greater numbers in organism / cauline leaf::decreased size / stem::abnormal / whole plant::increased height
  • F23131 - rosette leaf::abnormal / whole plant::decreased height / fruit::decreased length / stem::present in greater numbers in organism / rosette leaf::decreased size / rosette leaf::increased width / rosette leaf::abnormal / whole plant::decreased height / fruit::decreased length / stem internode::decreased length
  • F24145 - Specific phenotypes were NOT observed.
  • F24815 - Specific phenotypes were NOT observed.
  • F26315 - rosette leaf::abnormal / stem::increased thickness / whole plant::decreased height / stem::abnormal
  • F28215 - rosette leaf::abnormal / rosette leaf::present in greater numbers in organism / whole plant::decreased height / stem::abnormal / rosette leaf::decreased size / rosette leaf::increased width / whole plant::decreased height / stem::abnormal / stem internode::decreased length
  • F29705 - Specific phenotypes were NOT observed.
  • F30305 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

12 mutant lines found