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  3. RAFL06-72-L08

RAFL06-72-L08

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03401)

full reading [+] show sequence

Nucleotide sequence: RAFL06-72-L08 - full reading 
ATCCTCCAAA TTTGATACCT CTTCCCTCAC AATCTCCAAC AATGGCTGAC 
GATAAGAAGA AGCGGAACAA GAAGAAGCGT AGTACTGGTA ACAAGAGGAA 
GATGACCACT GAGCAATCAG AAGCCTTTAA GTCAATCACC GATTGGCTCA 
TCTTAGGTTC TTCTCCATCT CTCTCCTCTT CCTCTGATGA CTTTGCCGTC 
AACATCAATT CTGGTTCTCT AAGATGTGGA GAGAAAGTTG TGTTTGAGCT 
TCATTCTCAT TCAAATCGCA GCGATGGGTT TCTATCACCT TCAAAGGTCG 
TGGAGAGGGC TTATAACAAT GGGGTGAAAG TTCTTTCTTT AACGGATCAT 
GATACTATGG CTGGTGTCCC GGAAGCAGTG GAAGCAGGAC GTAGATTCGG 
TATCAAGATC ATTCCGGGTA TTGAGATCAG CACATTATTC GGTTTAAGAG 
ACTCCGGGTC TGAGGAGCCA GTGCATATAC TTGCGTATTA TGGCACTTCC 
GGTCCAGCAT TATATGATGA GTTGGAAGAT TTCTTGGTGA AGATAAGAGA 
TGGGCGTTTC GTTCGTGGGA GAGAAATGGT ATTGAAATTG AATAAGCTAA 
AGATACCTTT AAAATGGGAG CATGTTACCA GGATTGCAGG CAAGGATGTT 
GCCCCGGGTA GGATGCATGT AGCCCGAGCG CTTCTTGAAG CAGGCTACGT 
GGAGAATTTG AGACAAGCTT TCACTAAATA TTTACATGAT GGTGGACCTG 
CTTATGCTAC AGGGACTGAG CCTATGGCCG AGGAAGCAGT AAAACTTATA 
TGCAAAACCG GTGGTGTAGC TGTGCTTGCA CATCCGTGGG CGTTGAAGAA 
TCATGTCGGT ATTATTAGGA GATTGAAGGA TGCTGGACTT CATGGGGTCG 
AGGTTTATAG GAGCGACGGC AAGTTAGAAG TGTTTAGCGA GTTGGCTGAT 
ACATACAATC TGCTAAAGCT AGGAGGATCA GATTATCATG GAAAAGGCGG 
ACGCAATGAA TCAGAATTGG GGAGTGTAAA CCTTCCCGTG ACGGCATTGC 
AGGACTTCTT GAACGTTGGA CGTCCTATAT GGTGTGAGGC CATTAAAGCA 
ACCATGAGAG CATTCCTTGA CCAACCATCA GATTCAAACC TCTCCAATAT 
CTTAAGGTTC GATAAGGCAA GGATTCTGAA AGGAAATTCA GCTTGGTCCT 
GTGGTAAGGA GTTGATGGAC CGATGTTTAG CGATTTGGTT GACCAGTGAT 
GAGAGAAACA GCAATGACTT TGAGGCTCTC AGATTGAAGC TCTCTTTTGT 
ACCAATCATG TCAAACGGAA CATGTGTCAC AGTTGGTCCT TAAATATTTA 
GTCTGGTCTC TTTTTATCT

Gene models with high sequence identity

  1. AT2G13840.1 [+] show detail - Polymerase/histidinol phosphatase-like
    E-value: 0; Score: 99.78

 

InterPro Scan Digest

Program Description E-value
Gene3D no description 0.00013
superfamily Polymerase/histidinol phosphatase-like 5.6e-35
HMMSmart Polymerase/histidinol phosphatase, N-terminal 5.6e-24
HMMPfam PHP, C-terminal 3.9e-20

See the detailed result >

AT2G13840.1

Model type
Protein coding
Short Description
Polymerase/histidinol phosphatase-like
Computational Description
Polymerase/histidinol phosphatase-like; FUNCTIONS IN: DNA binding, DNA-directed DNA polymerase activity, catalytic activity; INVOLVED IN: DNA replication; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Polymerase/histidinol phosphatase-like (InterPro:IPR016195), Polymerase/histidinol phosphatase, N-terminal (InterPro:IPR003141), PHP, C-terminal (InterPro:IPR004013); Has 4358 Blast hits to 4353 proteins in 1589 species: Archae - 140; Bacteria - 3576; Metazoa - 0; Fungi - 2; Plants - 36; Viruses - 0; Other Eukaryotes - 604 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-72-L08 introduced

  • F09513 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found