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  3. RAFL06-72-M13

RAFL06-72-M13

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03404)

full reading [+] show sequence

Nucleotide sequence: RAFL06-72-M13 - full reading 
GACATAAAAT TTGTATAATA GTACGTGGTT GATCGTTTTT GTGTGTTGAA 
AATCAAAATG GCGTCGAGCG ATGAGCGTCC AGGAGCGTAT CCGGCACGTG 
ACGGATCAGA GAACTTACCT CCGGGAGATC CAAAGACGAT GAAGACGGTG 
GTGATGGATA AAGGAGCGGC GATGATGCAA TCGTTGAAAC CGATCAAACA 
GATGAGTCTC CATTTGTGTT CTTTCGCTTG TTATGGTCAC GATCCTAGCC 
GTCAGATTGA AGTCAACTTC TATGTTCATC GACTCAACCA AGACTTTCTT 
CAATGTGCTG TTTACGATTG CGACTCCTCT AAACCCCATC TCATCGGGAT 
CGAGTATATT GTGTCGGAGA GGTTATTTGA GAGTCTTGAT CCGGAGGAGC 
AAAAGCTTTG GCACTCTCAT GACTATGAGA TCCAAACAGG CCTTCTAGTA 
ACTCCAAGGG TCCCTGAGCT TGTAGCTAAG ACAGAGCTTG AAAATATTGC 
CAAAACTTAT GGGAAGTTTT GGTGCACTTG GCAGACCGAT CGCGGGGATA 
AATTGCCACT TGGTGCACCA TCACTTATGA TGTCACCACA AGACGTGAAT 
ATGGGAAAGA TCAAGCCAGG GCTATTGAAG AAACGTGACG ATGAGTATGG 
AATCTCGACG GAATCTTTGA AGACGTCTCG AGTTGGAATT ATGGGACCGG 
AGAAGAAAAA TTCGATGGCT GATTATTGGG TTCATCACGG AAAAGGATTA 
GCGGTTGACA TAATCGAAAC TGAGATGCAG AAATTGGCTC CGTTCCCGTA 
ATGAAGTTGG TGTGTAACTA ATAATAAAAT GTTGTATATG TCGTCCTATG 
TTGTCTTATA AGACCATTAG TAAACATAAT TATCCTATAT ATATATACTG 
TTGTCTGTGT TGAAATATAA CCACCTTCAA CGTAAAAAAA T

Gene models with high sequence identity

  1. AT5G45690.1 [+] show detail - Protein of unknown function (DUF1264)
    E-value: 0; Score: 99.89

 

InterPro Scan Digest

See the detailed result >

AT5G45690.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF1264)
Computational Description
Protein of unknown function (DUF1264); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: seed, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1264 (InterPro:IPR010686); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1264) (TAIR:AT4G18920.1); Has 288 Blast hits to 288 proteins in 123 species: Archae - 0; Bacteria - 122; Metazoa - 0; Fungi - 64; Plants - 100; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-72-M13 introduced

  • F08119 - Specific phenotypes were NOT observed.
  • F13623 - rosette leaf::dark green / rosette leaf::decreased size / rosette leaf::increased width / cauline leaf::epinastic / whole plant::decreased height / sporophyte vegetative stage::decreased speed / fruit::decreased length / rosette leaf::desaturated green / rosette leaf::decreased size / rosette leaf::increased width / cauline leaf::abnormal / whole plant::decreased height / fruit::abnormal
  • F29510 - Specific phenotypes were NOT observed.
  • F29801 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found