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  3. RAFL06-72-O11

RAFL06-72-O11

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03414)

full reading [+] show sequence

Nucleotide sequence: RAFL06-72-O11 - full reading 
GTCTCCTAGA GCGACTTGAA TCCTTGAGCT TTCAAACTCA TCTCCCGGAG 
CTTCCCTTTT CTCTTTACTC TCTCTCTCTC TCTCTCTCTC TCTCACTTTT 
CTCTGTTTTT TTTCTTGGTG TCTGTCTTAA TTCCACCATT AATGCTCTCT 
ACCTTCCCTT TTACTCTTCC CCTGCTTTTG TGTTTTCTCT TTCTCTTTTC 
TAAACCCTTT CAAACTCTTC TTCCTCTTCT TTCTTTTTCT CCAATAACAG 
TTTCTTGTGC TCATGTTAAA ACTGCAGCTC TTTTCCGGTA AAAAGAAAAG 
CTTTTTGGTC AGTTTAGTTA TCCTCAAGCA TCAAAACCTT ACTTGAGCTC 
TGCATCATCA TCCATGGCCA TGGCCGACTA GCCTTCTTTC TTCGCTTTTT 
ACCTCCTTAA TATCTTTAAA AGCGAGAGGA AATGTTCAAC GGCGCCGTTT 
CACTACTCTT CCTCTTCCTT GCCGTCGTTT CAGCGAGGGC AGATCCGACA 
TTCAACGACG ACGTTTTGGG TCTCATCGTT TTCAAGGCCG GACTCGACGA 
CCCTCTCTCT AAGCTCTCTT CTTGGAACTC GGAAGACTAC GATCCCTGCA 
ACTGGGTCGG TTGCACATGC GACCCTGCCA CCAATCGGGT CTCGGAGCTC 
CGCCTTGACG CCTTCTCTCT CTCCGGTCAC ATCGGCCGTG GCCTTCTCCG 
TCTCCAGTTC CTCCACACCT TGGTCCTCTC CAACAACAAC CTCACCGGAA 
CCCTAAACCC CGAGTTCCCT CACCTCGGCA GCCTCCAAGT CGTCGATTTC 
AGTGGCAATA ATCTCTCGGG TCGGATCCCA GACGGGTTCT TCGAGCAATG 
CGGGTCCTTG AGGTCCGTTT CCTTGGCTAA CAACAAACTC ACAGGTTCTA 
TTCCTGTCTC CCTCAGCTAC TGTTCTACTC TCACCCATCT TAACCTCTCA 
AGCAATCAAC TCTCTGGGAG GTTGCCCCGA GATATCTGGT TCCTCAAGAG 
CTTAAAGTCC CTTGATTTCT CTCACAATTT CCTCCAAGGA GATATCCCCG 
ATGGCCTCGG CGGTCTCTAC GATCTCCGTC ATATCAACTT ATCCAGGAAC 
TGGTTTTCCG GTGACGTTCC TTCCGACATC GGACGATGCT CTTCCCTTAA 
ATCGCTTGAC TTGAGTGAGA ACTACTTCTC CGGGAATCTT CCGGATTCGA 
TGAAAAGCCT GGGCTCTTGC AGCTCCATCC GTCTGCGAGG AAACTCTCTG 
ATCGGAGAAA TCCCTGATTG GATCGGCGAC ATTGCCACTC TCGAGATTCT 
TGATCTCTCC GCCAACAACT TCACCGGCAC TGTCCCATTC TCCCTCGGAA 
ATCTCGAGTT TTTGAAGGAT CTCAATCTAT CCGCAAACAT GCTCGCTGGA 
GAGCTCCCAC AGACTCTCTC CAACTGCTCC AACCTAATCT CCATTGATGT 
CAGCAAGAAT TCATTCACCG GAGATGTGCT TAAGTGGATG TTCACCGGAA 
ACTCTGAAAG TTCCTCGCTT TCCAGATTTA GCCTCCACAA AAGATCAGGG 
AACGACACCA TTATGCCCAT CGTTGGATTC CTCCAAGGTC TCCGGGTCCT 
CGATCTGTCT TCAAACGGCT TCACCGGTGA ATTACCGTCT AACATTTGGA 
TTCTCACAAG TTTGTTGCAG CTCAATATGT CCACCAACTC TCTCTTCGGT 
TCCATACCCA CCGGCATTGG AGGATTGAAA GTCGCTGAGA TTCTTGATCT 
TAGTAGTAAT CTTCTCAACG GAACCCTTCC TTCTGAGATC GGAGGAGCCG 
TCTCCCTGAA ACAACTTCAT CTCCACAGAA ACCGCCTCTC CGGCCAGATT 
CCGGCAAAGA TCTCTAACTG TTCGGCTTTA AACACAATAA ATCTATCGGA 
GAATGAACTA TCCGGTGCGA TTCCGGGGAG CATTGGCAGT CTGAGCAACC 
TTGAGTACAT TGATCTGTCG AGAAACAATC TCTCGGGAAG TCTTCCCAAA 
GAAATAGAGA AACTTTCGCA TCTCTTGACC TTTAACATCT CCCACAACAA 
CATCACAGGG GAGCTGCCAG CTGGAGGTTT CTTCAACACC ATCCCTCTCT 
CTGCTGTCAC CGGAAACCCA TCCCTTTGTG GCTCCGTCGT TAACCGCTCA 
TGTCTCTCTG TCCACCCCAA ACCAATCGTC CTCAACCCCA ACTCCTCCAA 
TCCAACAAAT GGTCCTGCTC TCACAGGGCA GATCAGGAAG AGCGTTCTGA 
GCATATCTGC GCTCATTGCC ATTGGCGCAG CTGCCGTCAT TGCCATCGGG 
GTGGTGGCTG TAACTCTGCT CAACGTGCAC GCCCGATCTA GTGTTTCACG 
TCACGATGCA GCTGCTGCTC TCGCTCTGTC GGTTGGAGAG ACGTTCAGCT 
GTTCGCCAAG TAAAGATCAA GAGTTTGGAA AGCTGGTCAT GTTCTCAGGG 
GAAGTGGACG TGTTTGACAC CACTGGCGCT GATGCGTTGC TCAACAAGGA 
CAGCGAGCTG GGACGAGGCG GGTTCGGTGT GGTGTACAAA ACGAGTCTTC 
AGGATGGGCG TCCTGTGGCA GTTAAGAAAC TGACAGTGTC GGGTCTAATA 
AAGTCGCAGG AGGAGTTCGA GAGAGAGATG AGAAAACTCG GGAAGCTGAG 
GCACAAGAAT GTGGTGGAGA TAAAAGGGTA CTACTGGACG CAATCGCTGC 
AGCTCTTGAT CCACGAGTTT GTTTCAGGCG GAAGCTTGTA CAGACATCTC 
CACGGAGATG AGAGCGTTTG CCTAACTTGG CGTCAACGTT TCAGTATCAT 
TCTAGGGATA GCAAGAGGTC TGGCTTTTCT GCATAGCAGT AACATCACTC 
ACTACAACAT GAAAGCAACG AATGTGCTCA TTGACGCCGC AGGGGAGGCT 
AAAGTCTCTG ACTTTGGGCT GGCCAGACTG TTGGCTTCGG CGCTGGACAG 
GTGCGTCTTG AGTGGCAAGG TACAGAGCGC GTTGGGGTAC ACAGCCCCGG 
AGTTTGCATG CCGGACAGTC AAGATAACCG ACAGGTGCGA TGTTTACGGG 
TTTGGGATCC TGGTGCTGGA GGTGGTGACA GGGAAGAGAC CCGTGGAGTA 
CGCTGAGGAC GACGTCGTGG TCTTGTGTGA GACGGTGAGA GAAGGGTTAG 
AAGAAGGGAG GGTGGAGGAG TGCGTTGACC CTCGGTTGAG AGGGAATTTT 
CCAGCGGAGG AGGCAATACC GGTGATTAAA CTAGGGTTGG TGTGTGGGTC 
CCAAGTGCCG TCGAATAGGC CGGAGATGGA GGAAGTGGTG AAGATATTAG 
AGCTCATACA ATGTCCCTCT CATGACTTAG AGTGATTAGT CAACTACAGA 
TGAATCAATC CTCCTTGTTT GTATTTCTTC ATTCCTTGTT CAATTTTCAT 
ATTATCATAA TATAGTGTTC GTCTTTCC

Gene models with high sequence identity

  1. AT5G01890.1 [+] show detail - Leucine-rich receptor-like protein kinase family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
ProfileScan Protein kinase, catalytic domain 35.354
PatternScan Protein kinase, ATP binding site 0
HMMSmart Leucine-rich repeat, typical subtype 11
HMMSmart Leucine-rich repeat, typical subtype 23
HMMSmart Leucine-rich repeat, typical subtype 110
HMMSmart Leucine-rich repeat, typical subtype 30
HMMSmart Leucine-rich repeat, typical subtype 260
HMMSmart Leucine-rich repeat, typical subtype 47
HMMSmart Leucine-rich repeat, typical subtype 46
HMMSmart Serine/threonine-protein kinase domain 1.6e-27
HMMSmart Tyrosine-protein kinase, catalytic domain 7.3e-18
FPrintScan Toll-like receptor, leucine rich repeat-containing 0.000085
FPrintScan Toll-like receptor, leucine rich repeat-containing 0.000085
HMMPanther LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KIN 8.6e-262
HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 8.6e-262
Gene3D no description 2.3e-31
Gene3D no description 1.7e-43
Gene3D no description 3.7e-48
Gene3D no description 3.8e-16
Gene3D no description 4.6e-40
superfamily L domain-like 2.3e-70
superfamily Protein kinase-like domain 1.1e-64
superfamily RNI-like 2.3e-56
HMMPfam Serine-threonine/tyrosine-protein kinase 4.6e-42
HMMPfam Leucine-rich repeat 0.78
HMMPfam Leucine-rich repeat 0.044
HMMPfam Leucine-rich repeat 0.13
HMMPfam Leucine-rich repeat 0.062
HMMPfam Leucine-rich repeat 0.33
HMMPfam Leucine-rich repeat 0.11
HMMPfam Leucine-rich repeat 0.16
HMMPfam Leucine-rich repeat 0.006
HMMPfam Leucine-rich repeat-containing N-terminal domain, type 2 0.0000000000011

See the detailed result >

AT5G01890.1

Model type
Protein coding
Short Description
Leucine-rich receptor-like protein kinase family protein
Computational Description
Leucine-rich receptor-like protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT3G56370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-72-O11 introduced

  • F03850 - Specific phenotypes were NOT observed.
  • F16509 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

17 mutant lines found