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Full-length cDNAs
RAFL06-73-D20

RAFL06-73-D20

RIKEN Arabidopsis Full-length cDNAs

GGATCAAGTT CTCAATTTCT CTCCGTTATC TCAATCGCGA CCAAAGATCT 
CTTCGATCAA AACCCTAGCT CTAAATTCCC CCAAATCTGA TTCTTCTCCT 
CCGATAAGCT TTTGTTGAAT TCACAAAGCA GCGTAAATGG TGTTGGCGGA 
GCTAGGCGGG CGGATTACCC GCGCGATACA GCAGATGAGC AATGTGACAA 
TTATCGATGA GAAGGCTTTG AATGAATGCT TGAACGAGAT CACTCGTGCT 
TTGCTTCAAT CCGATGTTTC ATTTCCCCTT GTGAAAGAGA TGCAGAGTAA 
TATTAAGAAA ATCGTCAATC TTGAAGATCT AGCAGCTGGT CACAACAAGC 
GCCGGATCAT TGAACAGGCT ATCTTTAGTG AACTCTGTAA GATGTTGGAT 
CCAGGGAAGC CTGCGTTTGC TCCTAAAAAA GCTAAAGCTA GTGTAGTTAT 
GTTTGTTGGA TTACAAGGTG CTGGAAAGAC GACAACTTGT ACTAAGTATG 
CTTATTATCA TCAGAAGAAA GGATACAAAC CAGCTTTGGT TTGTGCGGAT 
ACTTTCAGGG CTGGTGCGTT CGATCAGCTG AAACAGAATG CTACCAAGGC 
TAAGATCCCC TTTTATGGAA GCTACACGGA ATCCGATCCT GTGAAAATTG 
CTGTTGAGGG AGTAGATACG TTTAAGAAAG AAAACTGTGA TCTCATTATT 
GTTGATACCA GTGGTCGCCA TAAACAAGAA GCTTCTCTCT TTGAAGAAAT 
GCGTCAAGTT GCTGAAGCAA CGAAACCAGA TCTTGTTATA TTTGTTATGG 
ATAGCAGTAT TGGTCAAGCT GCATTTGATC AAGCTCAAGC CTTTAAGCAG 
AGTGTTGCTG TTGGAGCTGT AATTATTACT AAGATGGACG GCCATGCCAA 
GGGTGGTGGG GCTCTTAGCG CTGTTGCAGC TACGAAAAGT CCTGTGATAT 
TTATCGGAAC AGGAGAGCAT ATGGATGAGT TTGAAGTGTT TGACGTCAAA 
CCATTTGTCA GCCGTCTCTT AGGAATGGGT GATTGGTCTG GATTCGTGGA 
TAAGCTACAA GAGGTAGTAC CTAAAGATCA ACAGCCTGAA CTTCTGGAAA 
AGCTCTCTCA GGGTAACTTT ACGTTGAGAA TTATGTACGA CCAGTTCCAG 
AACATACTGA ACATGGGTCC ACTTAAGGAG GTTTTCTCAA TGCTGCCTGG 
AATTAGTGCT GAAATGATGC CGAAAGGACA TGAGAAAGAA AGCCAGGCGA 
AGATAAAGCG GTACATGACA ATGATGGATT CTATGACAAA TGATGAACTG 
GACAGCTCAA ACCCAAAGGT GTTTAACGAG TCACGGATGA TGCGGATAGC 
AAGAGGGTCA GGGAGGCAAG TAAGAGAAGT GATGGAGATG TTGGAAGAGT 
ACAAGAGGCT AGCGAAGATA TGGAGCAAGA TGAAAGGACT CAAGATCCCA 
AAGAATGGAG ATATGAGTGC ACTCTCGAGA AACATGAACG CACAGCACAT 
GAGCAAGGTC CTCCCACCTC AGATGCTCAA GCAGATTGGC GGCATGGGCG 
GTCTGCAGAG TCTAATGAAG CAGATGGGTT CCGGCAAGGA CATGATGGGA 
ATGTTCGGTG GCGGAGACAA GTAGTATCTT TCTTCCTTCC TTTGCACACC 
AAAAACTAGA CATTCTTACG TTGTCATTAT TAGAGTTTTC CCCTTTGTAT 
TTGTAAAATA TTTGCAAATT TTCTCCAATT TTACAAAAAG AGATTTGGTA 
ACAAAATAAT GTCTAGGGTC CAGTCGTGGA CATTATATAT TGAAAACCAA 
AAAAAAATTT ATATC

Gene models with high sequence identity

AT1G48900.1 [+] show detail - Signal recognition particle, SRP54 subunit protein
E-value: 0; Score: 99.94

InterPro Scan Digest

Program	Description	E-value
HMMTigr	Signal recognition particle, SRP54 subunit	0
Gene3D	Signal recognition particle, SRP54 subunit, helical bundle	1.6e-18
Gene3D	no description	1.4e-65
Gene3D	Signal recognition particle, SRP54 subunit, M-domain	1e-28
HMMPfam	Signal recognition particle, SRP54 subunit, GTPase	3.2e-76
HMMPfam	Signal recognition particle, SRP54 subunit, M-domain	3.2e-28
HMMPfam	Signal recognition particle, SRP54 subunit, helical bundle	0.00000000000042
HMMSmart	ATPase, AAA+ type, core	0.0048
superfamily	P-loop containing nucleoside triphosphate hyd	1.8e-67
superfamily	Signal recognition particle, SRP54 subunit, M-domain	2.3e-41
superfamily	Signal recognition particle, SRP54 subunit, helical bundle	1.3e-19
HMMPanther	SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN	1.9e-269
HMMPanther	GTPASE CONTAINING FAMILY OF SIGNAL RECOGNITIO	1.9e-269
PatternScan	Signal recognition particle, SRP54 subunit, GTPase	0

See the detailed result >

AT1G48900.1

Model type: Protein coding
Short Description: Signal recognition particle, SRP54 subunit protein
Computational Description: Signal recognition particle, SRP54 subunit protein; FUNCTIONS IN: 7S RNA binding, mRNA binding, nucleoside-triphosphatase activity, GTP binding, nucleotide binding; INVOLVED IN: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition, SRP-dependent cotranslational protein targeting to membrane; LOCATED IN: signal recognition particle, signal recognition particle, endoplasmic reticulum targeting; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), Signal recognition particle, SRP54 subunit, helical bundle (InterPro:IPR013822), Signal recognition particle, SRP54 subunit, M-domain (InterPro:IPR004125), Signal recognition particle, SRP54 subunit (InterPro:IPR006325), Signal recognition particle, SRP54 subunit, GTPase (InterPro:IPR000897); BEST Arabidopsis thaliana protein match is: Signal recognition particle, SRP54 subunit protein (TAIR:AT5G49500.1); Has 17579 Blast hits to 17572 proteins in 2934 species: Archae - 472; Bacteria - 10667; Metazoa - 363; Fungi - 296; Plants - 287; Viruses - 1; Other Eukaryotes - 5493 (source: NCBI BLink).
Link: InterPro Scan - TAIR

Mutant lines with RAFL06-73-D20 introduced

F16001 - rosette leaf::abnormal / rosette leaf::increased width / stem::decreased thickness / whole plant::decreased height / rosette leaf::decreased size / rosette leaf::increased width / cauline leaf::decreased size / cauline leaf::present in fewer numbers in organism / stem::decreased thickness / whole plant::decreased height / sporophyte vegetative stage::increased speed / whole plant flowering stage::premature
F17242 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found