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RAFL06-73-E06

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17232)

full reading [+] show sequence

Nucleotide sequence: RAFL06-73-E06 - full reading 
CCCGATTTCG CAGCTGCCTC CTTTTCGTTT GCCACTTTTT GATCAAGCGA 
AACTCCAAAA CACAGAGCCA TGCCGCCGAA GTTGGACCCG AGCCAGATCG 
TCGATGTGTA CGTCCGTGTA ACCGGAGGAG AAGTGGGAGC CGCCAGTTCT 
CTAGCTCCAA AGATCGGTCC TCTCGGTCTC GCACCAAAGA AGATCGGAGA 
AGACATCGCG AAAGAGACGG CCAAAGAATG GAAAGGACTT CGTGTCACCG 
TGAAGCTGAC GGTTCAGAAT CGTCAAGCTA AGGTAACCGT GGTTCCATCT 
GCTGCAGCTC TCGTCATCAA GGCGTTGAAG GAGCCAGAGA GAGACCGTAA 
GAAGGTGAAG AACATTAAGC ATAACGGTAA CATCTCTTTC GATGATGTGA 
CTGAGATTGC TAGGATTATG AGGCCTAGAT CTATTGCTAA GGAGCTGAGT 
GGGACTGTGA GGGAGATTCT TGGAACGTGT GTCTCTGTGG GATGCACTGT 
TGATGGGAAA GACCCTAAGG ATCTTCAGCA GGAGATTCAA GAAGGTGAGA 
TTGAGATTCC TGAGAATTAA GGAACAATGG AGTTTTTTTT TCTTCTTATG 
GGAATTTGAA ATGCTTCTGT TGTTATCTTT CTCGTTTTAC CATATTTTGT 
TTTTGTTTGG GAACTTAGCT GCTATGATGT TTCACTTAGA ATGACTCTCA 
AGTTTTGGAT TCTTATTATT CTCTGTTTCA AAACCCCAAT GGTTCTCTAG 
CAAAAAAAAA A

Gene models with high sequence identity

  1. AT3G53430.1 [+] show detail - Ribosomal protein L11 family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMSmart Ribosomal protein L11 5.7e-57
Gene3D Ribosomal protein L11, N-terminal domain 3.8e-33
PatternScan Ribosomal protein L11, conserved site 0
superfamily Ribosomal protein L11, C-terminal domain 7.4e-20
superfamily Ribosomal protein L11, N-terminal domain 8.9e-07
HMMPanther 60S RIBOSOMAL PROTEIN L12 1.1e-119
HMMPanther Ribosomal protein L11 1.1e-119
HMMPfam Ribosomal protein L11, N-terminal domain 1.6e-16
HMMPfam Ribosomal protein L11, C-terminal domain 5.8e-13

See the detailed result >

AT3G53430.1

Model type
Protein coding
Short Description
Ribosomal protein L11 family protein
Computational Description
Ribosomal protein L11 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L11, C-terminal domain (InterPro:IPR020783), Ribosomal protein L11, N-terminal domain (InterPro:IPR020784), Ribosomal protein L11, conserved site (InterPro:IPR020785), Ribosomal protein L11 (InterPro:IPR000911); BEST Arabidopsis thaliana protein match is: Ribosomal protein L11 family protein (TAIR:AT2G37190.1); Has 1591 Blast hits to 1591 proteins in 594 species: Archae - 303; Bacteria - 412; Metazoa - 359; Fungi - 167; Plants - 131; Viruses - 0; Other Eukaryotes - 219 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-73-E06 introduced

  • F09012 - Specific phenotypes were NOT observed.
  • F23415 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found