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  3. RAFL06-73-G23

RAFL06-73-G23

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03442)

full reading [+] show sequence

Nucleotide sequence: RAFL06-73-G23 - full reading 
GAGAGATCTC TGGCTCTGTA TCGCTCGCTG CTCTTCCTCC CACAGATCGA 
AAACCATGAA TCCTGAGTAC GACTATCTTT TCAAGCTCCT GCTTATCGGG 
GATTCTGGCG TAGGCAAGTC TTGTCTTCTT TTGAGATTCT CTGATGATTC 
TTATGTAGAA AGTTACATTA GCACTATTGG AGTCGATTTT AAAATTAGGA 
CTGTGGAACA AGATGGCAAA ACAATTAAGC TCCAAATTTG GGACACTGCT 
GGTCAAGAAC GGTTCAGGAC TATTACTAGC AGTTACTACC GTGGGGCACA 
TGGAATTATT ATTGTCTACG ATGTCACAGA TGAAGAAAGC TTCAATAATG 
TCAAGCAATG GTTGAGTGAA ATTGATCGTT ATGCTAGTGA CAATGTCAAC 
AAACTCCTTG TTGGAAACAA GTCTGATCTT ACTGAAAACA GAGCCATTCC 
TTATGAAACT GCCAAGGCTT TTGCCGATGA AATCGGGATT CCTTTTATGG 
AGACTAGTGC AAAAGATGCT ACAAACGTAG AACAGGCTTT CATGGCAATG 
TCTGCATCCA TCAAAGAGAG AATGGCTAGC CAACCAGCTG GGAATAATGC 
AAGACCACCG ACCGTGCAGA TCAGAGGACA GCCTGTGGCA CAGAAGAACG 
GCTGCTGCTC AACTTGATTG ACGTGACCAG CCTAGCAATA TCCTTTCCAA 
TCTTAGAACA CGTGTTCCTT CTTTTGACTA GGCTCCAATT CACTACTACT 
TGGTTTTTAC ACAACATCCC CCCAAATCTG TCTTGTCTGT AATTAAGCTC 
CTTTGGTTGG TTATTAAAAA G

Gene models with high sequence identity

  1. AT1G02130.1 [+] show detail - RAS 5
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
FPrintScan Ras GTPase 6.4e-46
FPrintScan Ras GTPase 6.4e-46
FPrintScan Ras GTPase 6.4e-46
FPrintScan Ras GTPase 6.4e-46
FPrintScan Ras GTPase 6.4e-46
HMMTigr Small GTP-binding protein 2.9e-34
HMMSmart ADP-ribosylation factor 0.0017
HMMSmart Ras small GTPase, Ras type 2.5e-34
HMMSmart Ras small GTPase, Rab type 3.9e-108
HMMSmart Small GTPase, Rho type 1.2e-17
HMMSmart Ran GTPase 5.4e-05
ProfileScan Small GTPase 39.209
HMMPanther RAS-RELATED PROTEIN RAB-1 1.6e-95
HMMPanther RAS-RELATED GTPASE 1.6e-95
superfamily P-loop containing nucleoside triphosphate hyd 1.1e-70
Gene3D no description 2.5e-69
HMMPfam Ras 9e-67

See the detailed result >

AT1G02130.1

Model type
Protein coding
Short Description
RAS 5
Curator Summary
Belongs to the Rab1 GTPase subfamily. This small GTP-binding protein is required in ER to Golgi transportation.
Computational Description
RAS 5 (RA-5); FUNCTIONS IN: GTP binding; INVOLVED IN: response to cadmium ion, ER to Golgi vesicle-mediated transport; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog 1A (TAIR:AT5G47200.1); Has 30420 Blast hits to 30350 proteins in 816 species: Archae - 27; Bacteria - 199; Metazoa - 15882; Fungi - 4318; Plants - 3658; Viruses - 20; Other Eukaryotes - 6316 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-73-G23 introduced

  • F16817 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found