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RAFL06-74-C07

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03474)

full reading [+] show sequence

Nucleotide sequence: RAFL06-74-C07 - full reading 
AAAGAAACGG TCTCAATCTT ATTTTCAGCG ATGGCGATGT CAATTCTAAA 
GCTAAGAAAT TTATCGGCAC TAAGATCGGC GGCAAATAGT GCCCGGATCG 
GAGTTTCATC GAGGGGTTTC TCAAAGCTCG CGGAAGGCAC TGACATAACC 
TCGGCGGCGC CTGGCGTTTC TCTCCAGAAA GCTCGCAGCT GGGACGAAGG 
TGTTTCCTCC AAATTCTCCA CCACGCCATT GTCAGATATC TTCAAGGGGA 
AGAAAGTCGT CATCTTTGGT CTTCCTGGGG CTTACACGGG AGTTTGTTCA 
CAGCAGCATG TGCCTAGCTA CAAGAGCCAC ATTGATAAGT TTAAAGCCAA 
AGGCATTGAT TCTGTCATCT GTGTCTCTGT TAATGATCCC TTTGCTATCA 
ATGGTTGGGC AGAGAAGCTT GGTGCCAAAG ATGCAATTGA GTTTTATGGA 
GATTTTGATG GGAAATTTCA CAAAAGCTTG GGGCTAGACA AGGATCTCTC 
TGCTGCATTG CTCGGGCCAC GGTCTGAGAG ATGGTCGGCT TATGTAGAAG 
ACGGGAAGGT TAAGGCGGTG AATGTGGAAG AAGCACCGTC TGACTTCAAG 
GTTACAGGGG CAGAAGTCAT CTTAGGACAG ATCTAAAAAG TATTTCCAGA 
GTTGCTGTTT CTTCTGAGTT GCAACTGATA ATAAGTTTGA TCCGAACATG 
TCTCAAGGAT CAGACCAAGT AACAGCTTCA CTTCTTTTGT TTTGTTTCCA 
CAGTTTCAGT TTAAATAAAA CTTATGTGTC TTGCCGTTT

Gene models with high sequence identity

  1. AT3G06050.1 [+] show detail - peroxiredoxin IIF
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
ProfileScan Thioredoxin-like 11.092
Gene3D Thioredoxin fold 9.9e-47
superfamily Thioredoxin-like fold 1.3e-33
HMMPfam Redoxin 3.3e-33
HMMPanther PEROXIREDOXIN 2.1e-134
HMMPanther PEROXIREDOXIN-5 2.1e-134

See the detailed result >

AT3G06050.1

Model type
Protein coding
Short Description
peroxiredoxin IIF
Curator Summary
Encodes a mitochondrial matrix localized peroxiredoxin involved in redox homeostasis. Knockout mutants have reduced root growth under certain oxidative stress conditions.
Computational Description
peroxiredoxin IIF (PRXIIF); FUNCTIONS IN: peroxidase activity, antioxidant activity; INVOLVED IN: response to oxidative stress, response to cadmium ion; LOCATED IN: mitochondrion, mitochondrial matrix; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336), Redoxin (InterPro:IPR013740); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT1G60740.1); Has 3925 Blast hits to 3925 proteins in 881 species: Archae - 6; Bacteria - 1549; Metazoa - 168; Fungi - 305; Plants - 221; Viruses - 0; Other Eukaryotes - 1676 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-74-C07 introduced

  • F02644 - Specific phenotypes were NOT observed.
  • F25730 - seed::increased size / seed::increased length / seed::decreased width

Mutant lines with disrupted or induced

4 mutant lines found