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  3. RAFL06-74-D03

RAFL06-74-D03

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03477)

full reading [+] show sequence

Nucleotide sequence: RAFL06-74-D03 - full reading 
GAACTTGTTT TTGGTTCATC TCTCAAAACC AAAATCACTA AAGAGGAGAA 
GATTGCTAAA GTTTGATAAA ACATTCCAAA ATCAATGGCT GATAGGATCA 
AAGGTCCATG GAGTCCTGAA GAAGACGAGC AGCTTCGTAG GCTTGTTGTT 
AAATACGGTC CAAGAAACTG GACAGTGATT AGCAAATCTA TTCCCGGTAG 
ATCGGGGAAA TCGTGTCGTT TACGGTGGTG CAACCAGCTT TCGCCGCAAG 
TTGAGCATCG GCCGTTTTCG GCTGAGGAAG ACGAGACGAT CGCACGTGCT 
CACGCTCAGT TCGGTAATAA ATGGGCGACG ATTGCTCGTC TTCTCAACGG 
TCGTACGGAC AACGCCGTGA AGAATCACTG GAACTCGACG CTCAAGAGGA 
AATGCGGCGG TTACGACCAT CGGGGTTACG ATGGTTCGGA GGATCATCGG 
CCGGTTAAGA GATCGGTGAG TGCGGGATCT CCACCTGTTG TTACTGGGCT 
TTACATGAGC CCAGGAAGCC CAACTGGATC TGATGTCAGT GATTCAAGTA 
CTATCCCGAT ATTACCTTCC GTTGAGCTTT TCAAGCCTGT GCCTAGACCT 
GGTGCTGTTG TGCTACCGCT TCCTATCGAA ACGTCGTCTT CTTCCGATGA 
TCCACCGACT TCGTTAAGCT TGTCACTTCC TGGTGCCGAC GTAAGCGAGG 
AGTCAAACCG TAGCCACGAG TCAACGAATA TCAACAACAC CACTTCGAGC 
CGCCACAACC ACAACAATAC GGTGTCGTTT ATGCCGTTTA GTGGTGGGTT 
TAGAGGTGCG ATTGAGGAAA TGGGGAAGTC TTTTCCCGGT AACGGAGGCG 
AGTTTATGGC GGTGTTGCAA GAGATGATTA AGGCGGAAGT GAGGAGTTAC 
ATGACGGAGA TGCAACGGAA CAATGGTGGC GGATTCGTCG GAGGATTCAT 
TGATAATGGC ATGATTCCGA TGAGTCAAAT TGGAGTTGGG AGAATCGAGT 
AGACAAAGTG AGATTATTAG GAAACTGTTT AAATTGGAGA AGAAGAAAAA 
TGCTCTGTTT TTTTCTCCTT TGGATTAGGC TTAAGAATTT TGGGTTTTAA 
GGAAATGTAT AGAGGAAATC GAGTGAACAA AGCTCGAGAG CTGGGGACGT 
AGTGACGAAG ACGAAGATCA AATTTCTCTT AAGCTATTCA GGAAAATAAA 
ATAAATTTTT ATTTATAACC

Gene models with high sequence identity

  1. AT5G67300.1 [+] show detail - myb domain protein r1
    E-value: 0; Score: 99.92

 

InterPro Scan Digest

Program Description E-value
ProfileScan HTH transcriptional regulator, Myb-type, DNA-binding 27.399
ProfileScan HTH transcriptional regulator, Myb-type, DNA-binding 19.77
HMMSmart SANT, DNA-binding 1.6e-17
HMMSmart SANT, DNA-binding 1.3e-14
HMMPanther R2R3-MYB TRANSCRIPTION FACTOR 1e-185
HMMPanther Myb transcription factor 1e-185
Gene3D Homeodomain-related 3.6e-16
Gene3D Homeodomain-related 8.4e-15
superfamily Homeodomain-like 1.4e-22
superfamily Homeodomain-like 3.1e-08
HMMPfam Myb, DNA-binding 1.7e-16
HMMPfam Myb, DNA-binding 2e-15

See the detailed result >

AT5G67300.1

Model type
Protein coding
Short Description
myb domain protein r1
Curator Summary
Member of the R2R3 factor MYB gene family involved in mediating plant responses to a variety of abiotic stimiuli.
Computational Description
myb domain protein r1 (MYBR1); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 77 (TAIR:AT3G50060.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-74-D03 introduced

  • F03125 - Specific phenotypes were NOT observed.
  • F12627 - rosette leaf::increased width / rosette leaf::abnormal / cauline leaf::epinastic / whole plant::decreased height / fruit::decreased length / stem::abnormal
  • F19506 - seed::decreased width
  • F24412 - Specific phenotypes were NOT observed.
  • F25823 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found