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  3. RAFL06-74-D12

RAFL06-74-D12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03478)

full reading [+] show sequence

Nucleotide sequence: RAFL06-74-D12 - full reading 
TGGCAGCAAT GGAGGATCTA TGGAAGAGGG CAAAATCGTT CGCAGAAGAA 
GCGGGTAAGA AGTCTCAGAC GATAACACAA TCATCCTCCG CGACCTTCGT 
CAATCTCGTC ACCGAGACTG CTAAGAAATC CAAGGAACTC GCTCTCGAAG 
CTTCGAAGAA AGCTGATCAA TTCAATGCCG CCGATTTCGT TGCTGAAACG 
GCTAAGAAAT CCAAAGAATT CGCTGCTGAA GCTTCAAAGA AGGCGGATCA 
GTTCAAAGTC GCCGCGCTGA AACAAGCTGA TCAGATCCAG AACATCAAAT 
CGATCGCTGA TATAATCGGG ACCGGGACCG GGTCAGGATC CGGTTCAGAA 
GCGGAGCTTC TCGAATTCGG TGTAACGGAT GATTTGAGAG AGTTCGCTGA 
AGGCTTGACC TCTGCTACAT TCCAAGCTTT TCCTGATCAA GATCAAGGGG 
ATGAAGTTTC CGATGTGATA ACAAATGCTT CGAATGTTCG AAAGGATCTC 
TCGGATTGGC AAGAGAGACA TGCCACTCTG GTTCTAACCT CTGTCAAGCA 
AATCTCCAAG TTAAGATACG AACTTTGCCC TCGTTTCATG AAAGAAAGGA 
GGTTCTGGAG GATTTATTTC ACACTAGTGA GCACTCATGT TTCTCCATAT 
GAGAGGAAGT ACATGGAGGA ACTTAAGACC AAAGGAGAGC ATGGAAATGA 
AGAAGCTAAG AAGGCTCCAG CGACTGGAGA GACAGAAACA GTAGAAAAGA 
ATGTTGCAAT CCGTAGAACA TCTACTGCGT CTTCTGAGCA GGATCTGGAT 
ACATTCCTGT TGGGTGATCT AGAAGACAGT GATGAAGCTC CAGATGATGG 
TGATGGAAGC CTTGAGGATG ACTTTGACAA GATTGGAAAC TCAGATGTTG 
AAGACGAGAA GCAATCATCT AAAGCTACAA CAAATGCAGG AAACGAAGTG 
TCTTGTTAGT TTTAAGTTCC AATTAGAAAA GGGTAAATGA AGAAGATGCT 
TGAAATGTAT AGTTTTGATT TAGTAAGTGA TGCATACGAA GACCTTGATT 
TCGCAATTCA TATATGATTC ATTTGTTTTG CC

Gene models with high sequence identity

  1. AT1G26300.1 [+] show detail - BSD domain-containing protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMSmart BSD 3.9e-12
HMMPfam BSD 1.4e-11
Coil coiled-coil 0
ProfileScan BSD 10.958

See the detailed result >

AT1G26300.1

Model type
Protein coding
Short Description
BSD domain-containing protein
Computational Description
BSD domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BSD (InterPro:IPR005607); BEST Arabidopsis thaliana protein match is: BSD domain-containing protein (TAIR:AT1G69030.1); Has 242 Blast hits to 239 proteins in 42 species: Archae - 4; Bacteria - 13; Metazoa - 9; Fungi - 4; Plants - 182; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-74-D12 introduced

  • F26405 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found