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  3. RAFL06-74-J22

RAFL06-74-J22

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09453)

full reading [+] show sequence

Nucleotide sequence: RAFL06-74-J22 - full reading 
GTCACATTTC TTTAACTTAA AAACTCTCCC GTTTCGCCGA AGCTTCTTCA 
ATGGCGATTT CTCTCGCCAC CGCCTATATC TCTCCATGTT TTACACCGGA 
ATCGTCTAAT TCCGCTTCAC CATCACGAAC TCTTTCCTCC GTACGATTAC 
CTTCTCAGAT TCGCCGATTC GGAAGTGTTC AATCGCCGTC TTCGTCTACT 
CGCTTCGCTC CACTCACTGT AAGAGCAGCA AAGAAGCAAA CTTTCAACTC 
TTTTGATGAT TTGTTGCAGA ACTCTGATAA ACCTGTACTT GTAGACTTCT 
ATGCTACTTG GTGTGGTCCA TGTCAGCTTA TGGTACCTAT ACTCAATGAA 
GTGAGTGAAA CACTGAAAGA TATAATTGCA GTTGTGAAAA TTGATACTGA 
GAAGTACCCA AGTCTTGCTA ACAAATACCA GATTGAGGCT TTGCCCACAT 
TCATCTTATT CAAAGACGGC AAACTCTGGG ACCGTTTCGA GGGTGCCTTG 
CCAGCGAACC AACTCGTTGA GCGTATTGAG AATTCTTTGC AAGTGAAACA 
GTAGGTTTGA GAAACCAAGA ATACTTGTCA TCTATGAACA ATCTGTTGTG 
ACATAAGCCA TTGTTGATTG TTTGCTCGGT ATAATCATCT ACCTATTCAT 
ATATGGCATC TGCCATTTTT CTC

Gene models with high sequence identity

  1. AT1G43560.1 [+] show detail - thioredoxin Y2
    E-value: 0; Score: 99.85

 

InterPro Scan Digest

Program Description E-value
HMMTigr Thioredoxin 3.7e-41
PatternScan Thioredoxin, conserved site 0
superfamily Thioredoxin-like fold 1.1e-34
ProfileScan Thioredoxin-like 16.135
FPrintScan Thioredoxin-like subdomain 0.00000017
FPrintScan Thioredoxin-like subdomain 0.00000017
FPrintScan Thioredoxin-like subdomain 0.00000017
Gene3D Thioredoxin fold 2.4e-32
HMMPanther THIOREDOXIN M(MITOCHONDRIAL)-TYPE 2.5e-34
HMMPanther Thioredoxin, core 2.5e-34
HMMPfam Thioredoxin domain 5.6e-30

See the detailed result >

AT1G43560.1

Model type
Protein coding
Short Description
thioredoxin Y2
Computational Description
thioredoxin Y2 (ty2); FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: glycerol ether metabolic process, cell redox homeostasis; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin (InterPro:IPR005746), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin Y1 (TAIR:AT1G76760.1); Has 23180 Blast hits to 21538 proteins in 3021 species: Archae - 298; Bacteria - 11849; Metazoa - 3466; Fungi - 1262; Plants - 2020; Viruses - 15; Other Eukaryotes - 4270 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-74-J22 introduced

  • F12811 - rosette leaf::upturned / rosette leaf::present in greater numbers in organism / cauline leaf::present in fewer numbers in organism / stem::decreased thickness / cauline leaf::epinastic / fruit::decreased length
  • F19143 - Specific phenotypes were NOT observed.
  • F22106 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found