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  3. RAFL06-74-J24

RAFL06-74-J24

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03509)

full reading [+] show sequence

Nucleotide sequence: RAFL06-74-J24 - full reading 
ACTGAGAGAG AGGATTACGA ATACGAGATC GGAGACATGG CGGAGAGTCA 
CGGTGGTGGT GGTGGTTGCT GTCCGCCGAT GGATCTGATG CGGTCAGAAC 
CGATGCAACT CGTTCAAGTC ATTGTTCCCA TGGAATCTGC TCATCTTACC 
GTCTCTTATC TCGGCGATCT CGGTCTCGTC CAGTTCAAAG ATCTTAATTC 
TGAGAAGAGC CCATTTCAAA GGACTTATGC TGCTCAGATA AAAAGATGTG 
GGGAAATGGC ACGAAAAATA CGTTTCTTTA AAGAGCAAAT GTCAAAGGCT 
GGAGTTACTC CCAAAGAGAC CCTAGATAGA GAAAATGATA TTGATTTGGA 
TGATGTAGAG GTAAAGCTTG AAGAGCTTGA AGCTGAACTT GTTGAAATCA 
ATGCTAATAA CGACAAGTTG CAGCGGTCTT ATAATGAACT TGTGGAGTAC 
AAGCTCGTTC TTGAGAAGGC TGGTGAGTTT TTTGCTTCAG CCCATAGAAG 
TGCTACCGCT CAACAGAGTG AGATAGAAAC AGAACAAGTG GGTGAAGACC 
TCCTGGAGGC TCCTCTGTTG CAGGAAGAGA AGTCTGTTGA TCCCACAAAG 
CAAGTAAAGC TTGGATTCCT CACTGGACTA GTGCCTCGTG AAAAGTCTAT 
GGTGTTCGAG AGGATCCTAT TTCGTGCAAC TAGGGGCAAC ATCTTCATAC 
GACAGTCTGT CATTGAGGAG TCTGTTGTTG ATCCCAACTC TGGGGAGAAG 
GCTGAGAAAA ATGTATTTGT CGTCTTCTAT TCTGGGGAAA GAGCAAAAAG 
CAAAATTCTT AAGATATGTG AAGCTTTTGG GGCCAATCGC TATCCTTTCA 
GTGAAGATCT GGGCAAACAA GCTCAAATGA TGACTGAGGT TTCAGGTCGG 
TTATCAGAGC TTAAAACTAC CATAGGTGCT GGGTTGGATC AGCGCAACAT 
TCTTTTAGAG ACCATTGGAG ATAAGTTTGA GCAATGGAAC CTCAAGATTC 
GCAAAGAAAA AGCTATCTAT CACACCTTGA ACATGCTTAG TCTTGATGTG 
ACTAAGAAGT GCCTTGTGGG TGAAGGCTGG AGTCCTGTCT TTGCAGCAAC 
AGAAATTCAA GATGCATTGC ATCGTGCTGC GGTTGACTCC AATTCTCAAG 
TTGGATCAAT TTTCCAAGTC CTGAGGACCA AAGAGATGCC TCCGACTTTT 
TTCCGCACAA ACAAATTTAC TACTGCTTTC CAGGAAATTG TTGATGCATA 
CGGTGTGGCC AAATATCAGG AGGCCAATCC TAGTGTATTC ACAATTGTTA 
CCTTCCCCTT CCTGTTTGCT GTTATGTTTG GTGACTGGGG TCATGGAATC 
TGCCTGCTGC TTGCAACTAT GTATTTAATA TTGAGAGAAA AGAAACTTTC 
CAGCCAGAAA CTTGGGGATA TTATGGAAAT GGCTTTTGGT GGCCGTTACG 
TTATTTTTAT GATGTCACTA TTCTCAATAT ACACTGGTTT AATCTACAAC 
GAGTTCTTCT CTATACCATA TCCATTGTTT GCTAGCTCAG CATACGATTG 
CCGTGATGTC TCTTGCAGTG AGGCTACTAC AATTGGTCTG ATCAAAACCC 
GAGACACTTA TCCATTTGGT GTGGATCCTG TGTGGCATGG TACCCGCAGT 
GAGCTACCAT TCCTAAATTC GCTTAAGATG AAAATGTCAA TTCTTATTGG 
AGTTGCACAA ATGAACCTCG GAATCATAAT GAGCTTCTTT AATGCAAAAT 
TCTTCAAAAG TGCTGTAAAC ATATGGTTCC AGTTCGTTCC CCAGATGATA 
TTCTTGAACT GCTTGTTTGG CTATCTTTCG GTCCTCATCA TCATAAAGTG 
GTGCACTGGT TCTCAAGCAG ATTTATATCA CGTAATGATC TACATGTTTC 
TGAGCCCTAT GGATGATTTA GGAGAGAATC AGCTGTTCCC TAACCAGAAA 
ATAGTACAGC TCACATTCCT CTTTCTGGCT CTGGTTTCTG TGCCGTGGAT 
GTTGTTGCCA AAGCCATTCA TCCTGAAAAA ACAACATGAA GCTAGACATC 
AAGGACTGTC ATATGCACAG CTTGACGAGA CAGATGAGAG TCTTCAAGTA 
GAAACAAATG GGGGAGGACA TGGACACGAA GAGTTTGAAT TCAGCGAAAT 
CTTTGTGCAC CAACTCATTC ACACCATTGA GTTTGTGCTT GGAGCTGTTT 
CCAACACTGC TTCTTATCTT CGTCTCTGGG CTCTCAGTCT CGCCCACTCG 
GAGTTGTCGT CAGTCTTCTA TGAGAAGGTC CTTCTTATGG CTTGGGGTTT 
CAACAATGTC TTCATCTGGA TCGTTGGAAT TCTCGTCTTC ATATTTGCGA 
CTGTGGGAGT GCTTCTTGTG ATGGAGACAT TGAGTGCATT CCTTCACGCG 
TTGCGTCTTC ACTGGGTGGA GTACCAGAAC AAGTTCTACG AAGGCGATGG 
TTACAAGTTT GCTCCTTTCA CTTTCACTCT CGTCGGAAAC GAAGACGAGT 
GATTGATGTT CCGATGTATC AGAAATGACT TCTTCTGCGT GTGCATATAT 
AAGGTATGGG AAGGATTCTG AGTTCCTTCC CTAATCATTT TTTTAAAAAA 
TTTAAGAAAA TAAATTTGGA TGTTTTTTCT G

Gene models with high sequence identity

  1. AT2G21410.1 [+] show detail - vacuolar proton ATPase A2
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther VACUOLAR PROTON ATPASE 0
HMMPanther ATPase, V0/A0 complex, 116kDa subunit 0
Coil coiled-coil 0
HMMPfam ATPase, V0/A0 complex, 116kDa subunit 1.1e-243

See the detailed result >

AT2G21410.1

Model type
Protein coding
Short Description
vacuolar proton ATPase A2
Curator Summary
Vacuolar proton ATPase subunit VHA-a isoform 2. Localized in the tonoplast. Required for efficient nutrient storage but not for sodium accumulation.
Computational Description
vacuolar proton ATPase A2 (VHA-A2); FUNCTIONS IN: ATPase activity, hydrogen-translocating pyrophosphatase activity; INVOLVED IN: cellular response to nutrient levels, ATP synthesis coupled proton transport; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, V0/A0 complex, 116kDa subunit (InterPro:IPR002490); BEST Arabidopsis thaliana protein match is: vacuolar proton ATPase A3 (TAIR:AT4G39080.1); Has 2867 Blast hits to 2293 proteins in 720 species: Archae - 334; Bacteria - 1213; Metazoa - 663; Fungi - 202; Plants - 115; Viruses - 0; Other Eukaryotes - 340 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-74-J24 introduced

  • F05320 - Specific phenotypes were NOT observed.
  • F13208 - Specific phenotypes were NOT observed.
  • F20413 - seed::increased size / seed::increased length
  • F29737 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found