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  3. RAFL06-74-M11

RAFL06-74-M11

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03523)

full reading [+] show sequence

Nucleotide sequence: RAFL06-74-M11 - full reading 
AACCTTCTCC TCTTTCTTAC GCAATTACAA CTTCAACGCC TCTCTATCTC 
TTCGCCGTGA ATGTCGAGAT AGTCGTAAGC TCTCTGCTTT TCAAATTTCT 
CTCAAATTGA GGTAGAGAGA GAGGGCACAG AGATAGAGAG AGAGGGGCAT 
AGGAAACGGT GATTTTCCCA GTTCCCGGAG GAACAATCGG CTGATTTCTC 
TGTAATCGAA GAATCTAAAC CTCACCCACT CGAAATCAGC TCGTGGGTTT 
TGGGGGGTCT CTATTAATTT CCAAATTCTG GAGAAAAATC TTGTATTTCT 
TCAAGATGTT TGGGTGTGAT TGTTTTTACT GGAGCAGAGG AATCTCCGAG 
TTGGATTCGG AATCGTCCGA GCCAAAGCCC TTCTCACTTC CGGCTCCTCT 
TCCTAGTTGG CCGCAAGGTA AAGGTTTTGC CACAGGAAGA ATTAGCCTAG 
GAGAAATAGA AGTGGTGAAA ATCACCAAGT TCCATCGAGT TTGGAGCTCT 
GATTCATCAC ACGACAAATC AAAACGTGCT ACATTTTACA GAGCCGATGA 
CATTCCAGAA GGATTCCATT GCCTTGGTCA CTATTGCCAG CCAACCGATC 
AGCCCTTGAG AGGTTATGTA CTTGCAGCTC GGACTAGCAA AGCCGTCAAT 
GCTGATGATT TCCCGCCCTT GAAAAAGCCT GTGAGTTATT CTTTAGTTTG 
GAGTGCAGAT TCAGAGAAAA ATGGTGGTGG TTATTTCTGG CTACCTAATC 
CTCCGGTTGG TTACAGAGCA ATGGGAGTTA TTGTAACCCA TGAACCAGGT 
GAACCTGAAA CAGAGGAGGT CAGATGTGTA AGAGAGGATC TTACAGAGAG 
TTGTGAAACC TCTGAGATGA TACTTGAGGT GGGTTCTTCG AAGAAGTCGA 
ACGGCTCTAG TTCTCCTTTT AGTGTATGGA GCACCCGACC TTGCGAGAGA 
GGGATGCTGT CACAAGGTGT CGCTGTTGGG TCATTCTTTT GCTGCACGTA 
TGATCTGTCG TCTGAGAGGA CGGTCCCTGA TATCGGATGC TTAAAGAATC 
TTGATCCGAC CTTACACGCG ATGCCAAATC TCGACCAGGT CCATGCGGTT 
ATCGAACACT TCGGACCAAC AGTCTACTTC CACCCAGAAG AGGCTTACAT 
GCCTTCATCT GTACAATGGT TCTTTAAGAA TGGAGCTTTG TTGTACCGGT 
CAGGGAAATC AGAAGGTCAA CCGATTAACT CCACGGGCTC GAACTTGCCT 
GCTGGAGGAT GCAATGATAT GGATTTCTGG ATAGATCTTC CTGAAGACGA 
AGAAGCAAAG AGTAATCTCA AGAAAGGAAA CCTTGAAAGC TCGGAGCTTT 
ACGTTCATGT GAAACCAGCA CTTGGTGGAA CTTTCACCGA CATCGTTATG 
TGGATTTTCT GCCCCTTTAA TGGCCCAGCC ACGCTCAAAA TCGGCCTATT 
CACGTTACCT ATGACCCGCA TAGGAGAACA TGTCGGTGAT TGGGAACATT 
TCACTTTCCG CATATGTAAT TTCTCTGGTG AGCTTTGGCA AATGTTCTTT 
TCTCAGCATA GTGGTGGTGG TTGGGTTGAT GCATCAGATA TTGAGTTTGT 
GAAAGATAAC AAACCGGCTG TGTACTCATC TAAACACGGA CATGCGAGTT 
TCCCTCATCC AGGAATGTAC CTCCAAGGCT CGTCAAAGCT CGGGATTGGA 
GTCAGAAACG ATGTTGCAAA AAGCAAGTAC ATTGTGGATT CAAGCCAAAG 
GTATGTGATA GTAGCAGCTG AGTATTTAGG TAAAGGAGCT GTGATAGAGC 
CGTGCTGGTT ACAGTATATG AGAGAATGGG GTCCGACCAT TGCATATGAT 
TCAGGGTCTG AGATCAATAA GATCATGAAT CTTCTTCCTT TGGTTGTTAG 
GTTCTCTATT GAGAACATTG TTGATTTGTT TCCCATTGCT CTTTATGGAG 
AAGAAGGTCC CACAGGGCCA AAGGAGAAAG ATAACTGGGA AGGAGATGAG 
ATGTGCTGAA AGAAGACAAA CCTCTTTGTG ATCAAGACGG TTTAATGGAA 
GATGAAGTCT CTTGTTGAAT CGGAGGGTTT TGATCTCTAC TCTACTAGTA 
ATTGTGACTA ATATGTAATT TACAGTATAC TAGAATAGGG TTTGATCTTG 
GTGGTTGTAA TTTGTTGATG TAAGACCTAA AACGCTGTGT TTGCGGCTGT 
AATCAGCTGC GACAGCTCAT GAGCAATATG AATGATTGAT TTTGTTGT

Gene models with high sequence identity

  1. AT3G04350.1 [+] show detail - Plant protein of unknown function (DUF946)
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther PRE-MRNA PROCESSING-RELATED 0
HMMPanther PRE-MRNA PROCESSING PROTEIN PRP39-RELATED 0
HMMPfam Protein of unknown function DUF946 8.5e-264

See the detailed result >

AT3G04350.1

Model type
Protein coding
Short Description
Plant protein of unknown function (DUF946)
Computational Description
Plant protein of unknown function (DUF946); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF946 (InterPro:IPR009291); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF946) (TAIR:AT5G18490.1); Has 389 Blast hits to 369 proteins in 101 species: Archae - 0; Bacteria - 21; Metazoa - 15; Fungi - 143; Plants - 203; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-74-M11 introduced

  • F14451 - seed::increased size / seed::increased length
  • F28649 - rosette leaf::present in greater numbers in organism / cauline leaf::decreased size / sporophyte vegetative stage::decreased speed / rosette leaf::dark green / rosette leaf::abnormal / cauline leaf::decreased size / stem::abnormal / stem::present in fewer numbers in organism

Mutant lines with disrupted or induced

6 mutant lines found