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  3. RAFL06-74-M22

RAFL06-74-M22

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03525)

full reading [+] show sequence

Nucleotide sequence: RAFL06-74-M22 - full reading 
AGGACGAATA TCTCTCTCTC TCTTTCTCTC TGCTTCCTTC TCGATTTCTG 
ATTCGCTCAC CGGCCGAGGA ATCAGATATG GCGACGAGAA CGGAATCGAA 
GAAGCAGATT CCGCCGTACA TGAAAGCAGT CTCAGGCTCA CTAGGCGGAG 
TGGTCGAGGC TTGTTGTCTC CAACCAATCG ACGTAATCAA AACGCGTCTC 
CAGCTAGATC GCGTCGGCGC TTACAAAGGA ATCGCTCACT GTGGTTCGAA 
GGTGGTTCGC ACCGAAGGAG TTCGTGCTCT CTGGAAAGGC TTAACACCGT 
TCGCTACTCA TCTCACGCTT AAGTACACGC TTCGGATGGG ATCCAACGCC 
ATGTTTCAAA CCGCCTTTAA GGATTCCGAG ACCGGAAAGG TCAGCAATCG 
TGGCCGTTTT CTTTCCGGAT TCGGTGCCGG TGTTCTTGAA GCTCTCGCCA 
TTGTTACACC CTTTGAGGTG GTGAAAATTA GACTTCAGCA GCAGAAAGGA 
TTGAGTCCTG AGCTTTTCAA GTACAAAGGA CCAATACATT GTGCTAGAAC 
CATCGTGAGA GAAGAAAGCA TACTTGGTTT ATGGTCAGGT GCAGCACCGA 
CGGTTATGCG AAACGGAACC AACCAAGCTG TAATGTTCAC AGCGAAAAAC 
GCGTTTGACA TACTCTTGTG GAACAAACAC GAAGGTGACG GTAAAATCTT 
GCAGCCATGG CAGTCAATGA TCTCAGGGTT TTTAGCTGGA ACCGCAGGTC 
CGTTCTGCAC AGGACCGTTT GATGTGGTGA AAACGAGGTT GATGGCTCAG 
AGCAGAGACA GTGAAGGTGG GATTAGATAT AAAGGGATGG TTCATGCCAT 
TAGAACGATT TATGCAGAGG AAGGATTAGT GGCCTTATGG AGAGGGTTAT 
TGCCGAGGCT AATGAGGATT CCTCCAGGAC AAGCCATTAT GTGGGCTGTT 
GCTGATCAAG TCACTGGTCT TTATGAGATG AGATATCTTC GGAATGCTCC 
TTTATAGGCA GAGACACTTT TTGAAATTCA GTGTTTCTAG TTGGTGTATT 
TCTGAAAATT CTTGTTAGGA TTTTGATTTG ATCAAGAAAA ATAAACCTAA 
TCGCACATTT TATAACGATG TTACTCTATA ATCAAATTTT GGGAGTTCCA 
TTTTGTTGTT GTCTGTAAGA CTCTGACTAA ATAAGTTTTA CT

Gene models with high sequence identity

  1. AT5G01340.1 [+] show detail - Mitochondrial substrate carrier family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Mitochondrial substrate/solute carrier 1.4e-18
HMMPfam Mitochondrial substrate/solute carrier 5.8e-19
HMMPfam Mitochondrial substrate/solute carrier 5.9e-25
FPrintScan Adenine nucleotide translocator 1 7e-08
FPrintScan Adenine nucleotide translocator 1 7e-08
FPrintScan Adenine nucleotide translocator 1 7e-08
ProfileScan Mitochondrial substrate/solute carrier 20.368
ProfileScan Mitochondrial substrate/solute carrier 22.942
ProfileScan Mitochondrial substrate/solute carrier 25.13
superfamily Mitochondrial substrate carrier 1.4e-81
HMMPanther TRICARBOXYLATE TRANSPORT PROTEIN 1e-141
HMMPanther Mitochondrial substrate carrier 1e-141

See the detailed result >

AT5G01340.1

Model type
Protein coding
Short Description
Mitochondrial substrate carrier family protein
Computational Description
Mitochondrial substrate carrier family protein; FUNCTIONS IN: transporter activity, binding; INVOLVED IN: transport, mitochondrial transport, transmembrane transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Adenine nucleotide translocator 1 (InterPro:IPR002113); BEST Arabidopsis thaliana protein match is: Mitochondrial substrate carrier family protein (TAIR:AT2G37890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-74-M22 introduced

  • F06308 - seed::increased size

Mutant lines with disrupted or induced

3 mutant lines found