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  3. RAFL06-74-O16

RAFL06-74-O16

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03533)

full reading [+] show sequence

Nucleotide sequence: RAFL06-74-O16 - full reading 
TGGCAACTTC ACCACCGGAC CAGTCTCTCT CTATCTCTTC TGTCTCTCTA 
CCTCGCGCGA CGAATCAATC ATGACTGAAG AACAAGACCT CATCGACCAA 
TCACCACCAC CTTCAGCACC CGACCCTGAA CCAAACTCGA GCACGAATCC 
GAATTCAGTA ATCCATCCAA GGCGTGTGTC TTTCGAGCAC GGACTCCTCC 
CGATCCAGAA ACTCGTTTTC ACCGACCCGA TCCAAACCTT AGCCCCTGTC 
AAGCAGAAGC TAGCCGATGC GGCTTCGAAT AACCGCGTTG GATCGGCTGC 
AATCGCCGAC GTTCTCCAGA TCTCCGGCGA CCATGCGCGT CTCGTTCTCG 
AGACTCTCGG TTCGGTGCTT CATTCCGAGT CTGACCCTCT GGTTCGGGCG 
AAACCTGAGG AAGTTGATTC CGTCGGAGCT GATTTGCGGG ATCTTATTTT 
GTTCCTGTAC ATTCAATCGT ATAAGAAGTT GCTTCCTAGG ACGCATAAGG 
ACTCCGCAGC GGTGGCTGAT GTTTGGCCAT CGACTTCAGC TTTTGATGGA 
TACTTGTCTG CGTTATCGCC AATTCAGCTT GTTCGCAGCA ACAGCCGTCG 
ATTTATGCCA TCACAGGCAG ATGATGAAGC TCATCAGTTG TCATATCTGC 
AAAAACATTT AGCAAACATC ATTTCTCTCC TTGCAGAGCC TGTGGAGGGA 
GAAGGAGATG AATCATTGGT TTTCTCTATG GAGGCGTTCG AGCATCTGCG 
TTTTCTTGTT CAGTTTGGTG ATAAGGGATC TGATGTATCT CCATTGAGCC 
AAGCTACTCC TTTTTTTGCA AATTCTGATC CGGATATGCC CGCTGTTCCA 
GTCCCCGCTT CCCAAGTGCA TGACTGGCTT CTGCAAAACA TAGCTTCCGC 
TTTAGAAAGC ATTACTGAGA GAATTTCTGG AAAAGAGAAC GGACCTTCTA 
ACGATCAAGA TGATGCGATG TCAGATGTTT GTGCTGCTCC GAACAAGGTT 
GCACCTAGTA CTAGAGGCCC GTGTTTAATC GAGGGAGTCT CCAAGACTTC 
ACTTGTTAAG CAAGCCTCCG ATCTAAGGGG TAGATCTGTG AAGGTTGTCA 
ATTGCCATGA TTCTGTAATT TATCTTTTAG CACCATTGCG ATATGCAACT 
GTGCACGGAT GTTCTGATAC TACTATAGTT TTGGGAGCTG TTGGCAAGGC 
AATAAAAGTT GAGCACTGTG AAAGAGTTCA TGTGATTGTA GCTGCCAAAC 
GAGTGTGCAT TGCCAATTGT CGTGAATGTG TATTCTTCTT GGGAGTCAAT 
CAGCGGCCAC TTATTGTTGG TGATAACCAC AAACTGCAGG TCGCTCCATA 
TAATACATTT TACTCTCATT TGGAAGAGCA CATGAGGGAG GTAGGGCTTG 
AGCCAACGAT CAACAAATGG GACAAACCAT TGGCCCTGGG AGCTGTGGAT 
CCACATGACT CCCTGTCACA TCCTGCCGGT GTTGCTGATG CACAGGCTGA 
ATCAGCTGCT TCTGTAGACC CTGACCAGTT CGTAAACTTT TTGATCCCAA 
ACTGGTTTAG CGGCGCGGAG CTTGGTTCGA CGAAAGACAA TCCATTTCCA 
TTGCCAGATG CTTATATGGC AGCTCAGCAG AGAAACCTTA AGAACTTTGA 
AGAAACAAGA CGATCGTTAA AAGAGGCGCC TCTAGAAGAA AACCGGAAAC 
GAGAGCTATC AAGTGCACTC CATGTTTATT TCAAAGACTG GCTTTACGCA 
TCTGGAAATA TAAGGCAACT CTACTGCCTA CAAGGTGACT AATAAGAATA 
ATAGACCAAG CGGAAAGTGT CTTGTTCATG TAGAGCTCCT TCGATCATAT 
TTGGCATATT GCTAGTGAAG AAACCCCACC CCAAGACCAA AAGAAAAAAG 
AAAAAAGAGA AATCAGCCTG ATTCAGTGAT TTGTAGTTTG GAACCAATAC 
TTCACAACGT AACTTATCTG CACAGAAATA CTCTCTTAAA GCTTTCGTTT 
AGATTATTGT TTTCTTGATT TCTGCTTTTC TTTCCTTGAC ATTTCAATCC 
ATCGTTTTTG TTCCCTTCTC

Gene models with high sequence identity

  1. AT3G57890.1 [+] show detail - Tubulin binding cofactor C domain-containing protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMSmart CARP motif 0.0000059
HMMSmart CARP motif 0.000023
Coil coiled-coil 0
Coil coiled-coil 0
HMMPanther UNCHARACTERIZED 0
ProfileScan C-CAP/cofactor C-like domain 31.728
HMMPfam Tubulin binding cofactor C 5.3e-34

See the detailed result >

AT3G57890.1

Model type
Protein coding
Short Description
Tubulin binding cofactor C domain-containing protein
Computational Description
Tubulin binding cofactor C domain-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: CARP motif (InterPro:IPR006599), C-CAP/cofactor C-like domain (InterPro:IPR017901), Tubulin binding cofactor C (InterPro:IPR012945); BEST Arabidopsis thaliana protein match is: C-CAP/cofactor C-like domain-containing protein (TAIR:AT2G42230.2); Has 385 Blast hits to 385 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 212; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-74-O16 introduced

  • F03911 - Specific phenotypes were NOT observed.
  • F11502 - Specific phenotypes were NOT observed.
  • F18349 - Specific phenotypes were NOT observed.
  • F18350 - seed::increased size
  • F24227 - rosette leaf::increased size / rosette leaf::present in greater numbers in organism / rosette leaf::abnormal / sporophyte vegetative stage::decreased speed
  • F25702 - seed::decreased size
  • F29833 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found